Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   BPUM_RS08055 Genome accession   NC_009848
Coordinates   1658522..1659772 (+) Length   416 a.a.
NCBI ID   WP_012010019.1    Uniprot ID   A8FDG2
Organism   Bacillus pumilus SAFR-032     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1653522..1664772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BPUM_RS08030 (BPUM_1592) ymfI 1654931..1655659 (+) 729 WP_012010016.1 elongation factor P 5-aminopentanone reductase -
  BPUM_RS08035 (BPUM_1593) - 1655733..1655990 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  BPUM_RS08040 (BPUM_1594) - 1656122..1656913 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  BPUM_RS08045 (BPUM_1595) - 1656937..1657848 (+) 912 WP_041815525.1 helix-turn-helix domain-containing protein -
  BPUM_RS08050 (BPUM_1596) pgsA 1657924..1658505 (+) 582 WP_012010018.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BPUM_RS08055 (BPUM_1597) cinA 1658522..1659772 (+) 1251 WP_012010019.1 competence/damage-inducible protein A Machinery gene
  BPUM_RS08060 (BPUM_1598) recA 1659949..1660989 (+) 1041 WP_012010020.1 recombinase RecA Machinery gene
  BPUM_RS08065 (BPUM_1599) rny 1661295..1662857 (+) 1563 WP_003211958.1 ribonuclease Y -
  BPUM_RS08070 (BPUM_1600) - 1662945..1663739 (+) 795 WP_012010021.1 TIGR00282 family metallophosphoesterase -
  BPUM_RS08075 (BPUM_1601) spoVS 1663941..1664201 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45689.86 Da        Isoelectric Point: 5.0652

>NTDB_id=29279 BPUM_RS08055 WP_012010019.1 1658522..1659772(+) (cinA) [Bacillus pumilus SAFR-032]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQENDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGETSLVREASKALRDHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=29279 BPUM_RS08055 WP_012010019.1 1658522..1659772(+) (cinA) [Bacillus pumilus SAFR-032]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGAGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACAAAAGATGATTTA
ACAAAAGAAACCATTGCGAGCACGCTCGGAAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCGAATAACCGAAAACAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GGTTTGGGATGGCTCCGGGTATGTTCATTCAAGAAAACGATACGTTTTATATGCTTCTTCCAGGCCCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCAAAACCGCTCATATCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGTTTCTTTGGAATTGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAATCCAACGATTG
CACCTCTTGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAGACGGAAGCGAAAATTTTAGCGCGAGTAGGAGAGTACTTCTACGGGTATGGTGAGACATCACTTGTCCGCGAAGC
TTCCAAGGCCTTGCGCGATCACGGGAAAACAGTGGCAGCGGCTGAGAGCCTAACAGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCGTCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACATTGTCCTCTCATGGTGCTGTCAGCAAAGAGTGTGCTTTAGAGCTTGCTGAAGGTGTTAGAAAGCT
CACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCGGTCGGAAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACTGGAAGCCGGTCGGGCATTCGCAAACGC
GCTGTGAAATACGGTTTGCATCACTTGCTCAATTTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FDG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

73.976

99.76

0.738
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment