Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DDJ96_RS13735 Genome accession   NZ_CP029066
Coordinates   2882078..2883118 (-) Length   346 a.a.
NCBI ID   WP_010734076.1    Uniprot ID   A0A1L8V0B9
Organism   Enterococcus mundtii strain Pe103     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2877078..2888118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDJ96_RS15560 (DDJ96_13830) - 2877394..2877747 (-) 354 WP_034691573.1 hypothetical protein -
  DDJ96_RS13720 (DDJ96_13835) - 2877756..2878496 (-) 741 WP_010734080.1 hypothetical protein -
  DDJ96_RS13725 (DDJ96_13840) - 2879025..2879993 (-) 969 WP_137072960.1 hypothetical protein -
  DDJ96_RS13730 (DDJ96_13845) rny 2880233..2881789 (-) 1557 WP_010734077.1 ribonuclease Y -
  DDJ96_RS13735 (DDJ96_13850) recA 2882078..2883118 (-) 1041 WP_010734076.1 recombinase RecA Machinery gene
  DDJ96_RS13740 (DDJ96_13855) cinA 2883224..2884468 (-) 1245 WP_023520517.1 competence/damage-inducible protein A Machinery gene
  DDJ96_RS13745 (DDJ96_13860) pgsA 2884695..2885273 (-) 579 WP_019723896.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DDJ96_RS13750 (DDJ96_13865) - 2885445..2886335 (-) 891 WP_010734073.1 helix-turn-helix domain-containing protein -
  DDJ96_RS13755 (DDJ96_13870) yfmH 2886631..2887920 (-) 1290 WP_023520520.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37284.63 Da        Isoelectric Point: 4.8182

>NTDB_id=289841 DDJ96_RS13735 WP_010734076.1 2882078..2883118(-) (recA) [Enterococcus mundtii strain Pe103]
MADDRKAALDAALKKIEKNYGKGSIMKLGEKIDQQISTIPSGSLALDVALGIGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVIDSVAALVPRAEIDGEMGD
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEITPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKIAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMSNHPEMMAEVST
LVRAAYGIGEPVDVPEEAQEELPLDE

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=289841 DDJ96_RS13735 WP_010734076.1 2882078..2883118(-) (recA) [Enterococcus mundtii strain Pe103]
TTGGCAGATGATCGTAAAGCAGCCTTAGATGCTGCATTGAAAAAAATTGAAAAGAACTATGGGAAAGGTTCGATCATGAA
ACTGGGCGAAAAAATCGACCAACAAATCTCGACAATTCCAAGTGGTTCTCTTGCACTAGATGTTGCTTTAGGGATAGGTG
GCTATCCTCGTGGACGGATCATTGAAGTCTACGGTCCAGAAAGTTCAGGTAAAACAACGGTTGCACTTCATGCAATCGCA
GAAGTCCAAAAAAATGGTGGGACTGCCGCCTTTATTGATGCGGAACATGCCTTAGATCCACAATATGCCCAAAAATTAGG
GGTAAATATCGATGAATTACTCCTTTCTCAACCGGATACAGGAGAACAAGGATTAGAAATCGCTGATGCTTTAGTATCAA
GTGGTGCAGTAGATATTGTCGTTATCGACTCAGTAGCAGCTTTAGTACCACGTGCAGAGATCGACGGTGAGATGGGTGAC
TCACACGTAGGGTTACAAGCTCGTTTGATGTCTCAAGCCTTACGTAAACTGTCAGGATCGATCAACAAAACAAAAACGAT
CGCGATTTTCATCAACCAAATTCGTGAAAAAGTTGGCGTGATGTTCGGTAATCCAGAAATCACACCAGGAGGACGTGCGC
TGAAGTTCTATGCAACGATCCGTTTGGAAGTACGTCGTGCTGAACAATTGAAACAAGGAACGGACATTGTCGGTAACCGT
ACAAAGATCAAAGTCGTAAAAAATAAAGTAGCGCCACCATTCAAAATCGCTGAAGTCGATGTCATGTATGGCTTAGGTAT
CTCTCAAGAAGGCGAGCTATTGGATATGGCAGTTGAAAAAGATATCGTTGACAAGAGTGGTGCATGGTATTCTTACAAAG
AAGATCGCATTGGTCAAGGTCGTGAAAACGCGAAAATCTATATGTCAAATCATCCAGAGATGATGGCTGAAGTATCTACA
TTAGTGCGTGCAGCTTATGGCATCGGTGAACCAGTTGATGTACCAGAAGAAGCACAAGAAGAATTACCACTAGATGAATA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1L8V0B9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.779

99.422

0.783
  recA Bacillus subtilis subsp. subtilis str. 168

79.385

93.931

0.746
  recA Streptococcus pneumoniae D39

67.778

100

0.705
  recA Streptococcus pneumoniae R6

67.778

100

0.705
  recA Streptococcus pneumoniae Rx1

67.778

100

0.705
  recA Streptococcus pneumoniae TIGR4

67.778

100

0.705
  recA Streptococcus mitis SK321

68.513

99.133

0.679
  recA Streptococcus mitis NCTC 12261

68.421

98.844

0.676
  recA Streptococcus mutans UA159

67.055

99.133

0.665
  recA Streptococcus pyogenes NZ131

69.184

95.665

0.662
  recA Lactococcus lactis subsp. cremoris KW2

67.781

95.087

0.645
  recA Neisseria gonorrhoeae strain FA1090

59.942

98.844

0.592
  recA Neisseria gonorrhoeae MS11

59.942

98.844

0.592
  recA Neisseria gonorrhoeae MS11

59.942

98.844

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.691

94.509

0.592
  recA Acinetobacter baumannii D1279779

58.621

100

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.702

95.087

0.587
  recA Ralstonia pseudosolanacearum GMI1000

61.28

94.798

0.581
  recA Helicobacter pylori strain NCTC11637

57.895

98.844

0.572
  recA Helicobacter pylori 26695

57.895

98.844

0.572
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.3

93.353

0.572
  recA Vibrio cholerae strain A1552

61.3

93.353

0.572
  recA Acinetobacter baylyi ADP1

60.991

93.353

0.569
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.615

93.931

0.569
  recA Pseudomonas stutzeri DSM 10701

60.494

93.642

0.566
  recA Glaesserella parasuis strain SC1401

60.748

92.775

0.564

Multiple sequence alignment