Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DDJ96_RS13740 Genome accession   NZ_CP029066
Coordinates   2883224..2884468 (-) Length   414 a.a.
NCBI ID   WP_023520517.1    Uniprot ID   A0AAI8R964
Organism   Enterococcus mundtii strain Pe103     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2878224..2889468
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDJ96_RS13725 (DDJ96_13840) - 2879025..2879993 (-) 969 WP_137072960.1 hypothetical protein -
  DDJ96_RS13730 (DDJ96_13845) rny 2880233..2881789 (-) 1557 WP_010734077.1 ribonuclease Y -
  DDJ96_RS13735 (DDJ96_13850) recA 2882078..2883118 (-) 1041 WP_010734076.1 recombinase RecA Machinery gene
  DDJ96_RS13740 (DDJ96_13855) cinA 2883224..2884468 (-) 1245 WP_023520517.1 competence/damage-inducible protein A Machinery gene
  DDJ96_RS13745 (DDJ96_13860) pgsA 2884695..2885273 (-) 579 WP_019723896.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DDJ96_RS13750 (DDJ96_13865) - 2885445..2886335 (-) 891 WP_010734073.1 helix-turn-helix domain-containing protein -
  DDJ96_RS13755 (DDJ96_13870) yfmH 2886631..2887920 (-) 1290 WP_023520520.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  DDJ96_RS13760 (DDJ96_13875) yfmF 2887913..2889181 (-) 1269 WP_010734071.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45306.79 Da        Isoelectric Point: 5.1991

>NTDB_id=289842 DDJ96_RS13740 WP_023520517.1 2883224..2884468(-) (cinA) [Enterococcus mundtii strain Pe103]
MKSEIIAVGTELLLGQVVNTNATFLSEQLADLGIDVYYHTVVGDNPTRLEELLQLAESRSELIILCGGLGPTEDDLTKEV
VAKHLDRKLIQNTEGYKKLLAFFETTKRKMTDNNLQQSQIIEGGTPLPNRTGLALGTFYQTKSNAYLLLPGPPSELKPMF
VEQVRPLLEQQFPSEEKLISKVLRFYGIGESQLVTDLKDLIATQINPTIAPYAKPNEVTLRLTVKTSDIHAGNQALHALE
EKIQARVGEYFYGYGDDYSLPQAVVDLLKEQGKTVTAVESLTAGGFQSALGAIPGVSQVFSGGFVTYSAETKAKLLGIDP
DLLEQFGTVSKECAEQMAIRARQLVGTDYAVAFTGVAGPDTLEGHPAGTVWLAVASKEGVETKECHFTRDRSAIRNSAIM
QGFDLLRKQLLRKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=289842 DDJ96_RS13740 WP_023520517.1 2883224..2884468(-) (cinA) [Enterococcus mundtii strain Pe103]
ATGAAATCTGAAATCATAGCAGTAGGAACAGAATTATTACTTGGACAAGTCGTGAATACGAATGCGACATTTTTATCAGA
ACAGTTAGCAGATCTAGGAATCGATGTCTATTATCACACAGTTGTCGGGGATAATCCGACTCGTTTGGAGGAGTTACTCC
AGTTAGCTGAATCAAGAAGTGAACTAATCATTTTATGTGGTGGATTAGGACCAACAGAAGATGATTTAACAAAAGAAGTT
GTTGCAAAACACCTTGATAGAAAACTGATCCAAAATACAGAAGGTTACAAGAAACTGTTGGCATTTTTCGAAACGACAAA
AAGAAAAATGACGGATAACAATTTACAACAGTCCCAAATCATTGAAGGTGGCACACCATTACCTAATCGAACTGGCTTAG
CGTTAGGCACGTTTTATCAAACGAAAAGCAATGCCTATCTTTTACTTCCTGGGCCACCGAGTGAGTTGAAGCCGATGTTT
GTAGAACAAGTACGCCCCTTGTTAGAACAACAATTCCCTTCAGAAGAAAAACTGATCTCAAAAGTGTTGCGCTTCTATGG
CATTGGTGAATCACAATTAGTAACCGATCTAAAAGACTTGATTGCTACACAAATCAATCCCACGATTGCTCCTTATGCCA
AACCAAATGAAGTCACACTGAGATTGACCGTCAAAACGTCAGACATCCATGCAGGGAATCAAGCGTTGCACGCACTAGAA
GAAAAAATCCAAGCCCGTGTCGGTGAATATTTTTATGGCTATGGGGATGACTATTCGTTGCCACAAGCCGTCGTGGATCT
ACTGAAAGAACAGGGGAAGACAGTCACAGCAGTTGAGAGTTTGACAGCCGGAGGCTTTCAATCCGCACTAGGAGCGATTC
CTGGCGTCTCTCAAGTCTTTTCTGGTGGTTTTGTGACTTATTCAGCAGAGACCAAAGCAAAGCTCTTAGGCATCGATCCA
GACCTGTTAGAGCAGTTTGGCACAGTCAGTAAAGAATGCGCCGAACAAATGGCGATTCGAGCACGCCAACTCGTTGGTAC
AGATTATGCCGTAGCGTTTACTGGCGTAGCGGGACCCGACACATTAGAAGGACATCCTGCGGGTACAGTTTGGCTTGCCG
TTGCATCAAAAGAAGGCGTAGAAACAAAAGAATGTCACTTCACAAGAGACCGTTCGGCAATCAGAAATAGCGCGATTATG
CAAGGATTTGATCTGCTAAGAAAGCAACTATTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(259-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

53.589

100

0.541
  cinA Streptococcus pneumoniae TIGR4

51.905

100

0.527
  cinA Streptococcus pneumoniae Rx1

51.667

100

0.524
  cinA Streptococcus mitis SK321

51.667

100

0.524
  cinA Streptococcus pneumoniae R6

51.667

100

0.524
  cinA Streptococcus pneumoniae D39

51.667

100

0.524
  cinA Streptococcus mitis NCTC 12261

51.19

100

0.519
  cinA Bacillus subtilis subsp. subtilis str. 168

48.786

99.517

0.486
  cinA Streptococcus suis isolate S10

43.237

100

0.432

Multiple sequence alignment