Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DCE79_RS04755 Genome accession   NZ_CP029002
Coordinates   1062254..1063318 (+) Length   354 a.a.
NCBI ID   WP_108711972.1    Uniprot ID   A0A2S1GZF3
Organism   Lysinibacillus sp. 2017     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1057254..1068318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCE79_RS04730 (DCE79_04730) - 1057778..1058035 (+) 258 WP_108711967.1 DUF3243 domain-containing protein -
  DCE79_RS04735 (DCE79_04735) - 1058289..1059086 (+) 798 WP_108711968.1 DUF3388 domain-containing protein -
  DCE79_RS04740 (DCE79_04740) - 1059148..1060047 (+) 900 WP_234417334.1 RodZ family helix-turn-helix domain-containing protein -
  DCE79_RS04745 (DCE79_04745) pgsA 1060095..1060673 (+) 579 WP_108711970.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DCE79_RS04750 (DCE79_04750) cinA 1060829..1062094 (+) 1266 WP_108711971.1 competence/damage-inducible protein A Machinery gene
  DCE79_RS04755 (DCE79_04755) recA 1062254..1063318 (+) 1065 WP_108711972.1 recombinase RecA Machinery gene
  DCE79_RS04760 (DCE79_04760) rny 1063704..1065257 (+) 1554 WP_108714424.1 ribonuclease Y -
  DCE79_RS04765 (DCE79_04765) - 1065388..1066185 (+) 798 WP_108711973.1 TIGR00282 family metallophosphoesterase -
  DCE79_RS04770 (DCE79_04770) - 1066483..1067250 (+) 768 WP_108711974.1 tyrosine-protein phosphatase -
  DCE79_RS04775 (DCE79_04775) - 1067310..1068230 (+) 921 WP_108711975.1 LCP family protein -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38508.61 Da        Isoelectric Point: 4.8798

>NTDB_id=289168 DCE79_RS04755 WP_108711972.1 1062254..1063318(+) (recA) [Lysinibacillus sp. 2017]
MSDRKAALDMALKQIEKQFGKGSVMKLGENSNRKMETSSSGSIAIDAALGVGGYPRGRIVEVYGPESSGKTTVTLHAIAE
IQKNGGTAAFIDAEHALDPLYAQKLGVNIDELLLAQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTLAIFINQIREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTEIVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYSYNNDRIGQGRENVKQYLKENPATRDEVSEK
IREHFGIGEIGYTIGAHDNQAEEEEEVELFEEKE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=289168 DCE79_RS04755 WP_108711972.1 1062254..1063318(+) (recA) [Lysinibacillus sp. 2017]
TTGAGCGATCGTAAAGCAGCATTAGATATGGCGTTAAAACAAATTGAAAAACAATTTGGTAAAGGTTCGGTTATGAAGTT
AGGTGAAAATTCAAATCGTAAAATGGAAACATCTTCATCAGGATCAATTGCAATTGATGCAGCATTAGGAGTTGGCGGTT
ACCCACGTGGACGTATTGTGGAAGTATATGGACCAGAATCTTCTGGTAAAACAACTGTAACGTTACATGCCATTGCAGAA
ATTCAAAAAAACGGTGGTACAGCAGCGTTTATCGATGCTGAGCATGCGTTAGATCCTTTATATGCACAAAAATTAGGTGT
AAACATTGATGAATTATTATTAGCTCAACCAGATACAGGTGAACAAGCACTTGAAATCGCTGAAGCATTAGTACGCTCTG
GTGCGGTTGATATTATCGTTATTGACTCAGTAGCAGCATTAGTACCAAAAGCAGAGATTGAGGGCGAAATGGGTGACTCT
CACATGGGTCTACAAGCGCGTTTAATGTCTCAAGCATTACGTAAATTATCAGGTGTTATTAATAAATCTAATACACTTGC
CATCTTCATCAACCAAATTCGTGAAAAAATTGGTGTTATGTTCGGTAACCCAGAAACAACTACAGGTGGACGTGCGTTAA
AATTCTATTCATCAATCCGTTTAGAAGTACGTCGTGGTGAAGCAATTAAGCAAGGTACAGAAATCGTTGGTAACAAAACG
AAAATTAAAGTTGTAAAAAATAAAGTGGCACCACCATTCCGTACAGCAGAAGTTGATATTATGTATGGTGAAGGGATTTC
TAAAGAAGGCGAAATCGTTGATATTGGTGCTGAATTAGACATTATTCAAAAAAGCGGATCTTGGTATTCGTACAATAACG
ATCGTATTGGACAAGGTCGTGAAAATGTAAAACAATATTTAAAAGAAAATCCAGCTACTCGCGACGAAGTTTCTGAAAAA
ATTCGTGAACATTTCGGTATTGGTGAGATTGGTTACACAATCGGTGCCCATGACAATCAAGCAGAAGAAGAAGAAGAAGT
AGAGTTATTCGAAGAGAAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1GZF3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.04

92.373

0.749
  recA Latilactobacillus sakei subsp. sakei 23K

72.256

92.655

0.669
  recA Neisseria gonorrhoeae MS11

65.517

98.305

0.644
  recA Neisseria gonorrhoeae MS11

65.517

98.305

0.644
  recA Neisseria gonorrhoeae strain FA1090

65.517

98.305

0.644
  recA Streptococcus pyogenes NZ131

64.957

99.153

0.644
  recA Streptococcus mutans UA159

64.286

98.87

0.636
  recA Acinetobacter baylyi ADP1

63.352

99.435

0.63
  recA Ralstonia pseudosolanacearum GMI1000

66.265

93.785

0.621
  recA Streptococcus pneumoniae R6

66.364

93.22

0.619
  recA Streptococcus mitis NCTC 12261

66.364

93.22

0.619
  recA Streptococcus pneumoniae Rx1

66.364

93.22

0.619
  recA Streptococcus pneumoniae D39

66.364

93.22

0.619
  recA Streptococcus pneumoniae TIGR4

66.364

93.22

0.619
  recA Streptococcus mitis SK321

66.061

93.22

0.616
  recA Acinetobacter baumannii D1279779

62.108

99.153

0.616
  recA Lactococcus lactis subsp. cremoris KW2

65.455

93.22

0.61
  recA Glaesserella parasuis strain SC1401

61.538

99.153

0.61
  recA Vibrio cholerae strain A1552

66.254

91.243

0.605
  recA Vibrio cholerae O1 biovar El Tor strain E7946

66.254

91.243

0.605
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

92.938

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.819

96.61

0.588
  recA Helicobacter pylori strain NCTC11637

62.5

92.655

0.579
  recA Pseudomonas stutzeri DSM 10701

63.467

91.243

0.579
  recA Helicobacter pylori 26695

62.195

92.655

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

90.395

0.551

Multiple sequence alignment