Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   DCE79_RS04750 Genome accession   NZ_CP029002
Coordinates   1060829..1062094 (+) Length   421 a.a.
NCBI ID   WP_108711971.1    Uniprot ID   A0A2S1GZB7
Organism   Lysinibacillus sp. 2017     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1055829..1067094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DCE79_RS04725 (DCE79_04725) ymfI 1057006..1057734 (+) 729 WP_108711966.1 elongation factor P 5-aminopentanone reductase -
  DCE79_RS04730 (DCE79_04730) - 1057778..1058035 (+) 258 WP_108711967.1 DUF3243 domain-containing protein -
  DCE79_RS04735 (DCE79_04735) - 1058289..1059086 (+) 798 WP_108711968.1 DUF3388 domain-containing protein -
  DCE79_RS04740 (DCE79_04740) - 1059148..1060047 (+) 900 WP_234417334.1 RodZ family helix-turn-helix domain-containing protein -
  DCE79_RS04745 (DCE79_04745) pgsA 1060095..1060673 (+) 579 WP_108711970.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DCE79_RS04750 (DCE79_04750) cinA 1060829..1062094 (+) 1266 WP_108711971.1 competence/damage-inducible protein A Machinery gene
  DCE79_RS04755 (DCE79_04755) recA 1062254..1063318 (+) 1065 WP_108711972.1 recombinase RecA Machinery gene
  DCE79_RS04760 (DCE79_04760) rny 1063704..1065257 (+) 1554 WP_108714424.1 ribonuclease Y -
  DCE79_RS04765 (DCE79_04765) - 1065388..1066185 (+) 798 WP_108711973.1 TIGR00282 family metallophosphoesterase -

Sequence

Protein


Download         Length: 421 a.a.        Molecular weight: 45977.80 Da        Isoelectric Point: 5.0062

>NTDB_id=289167 DCE79_RS04750 WP_108711971.1 1060829..1062094(+) (cinA) [Lysinibacillus sp. 2017]
MNAEIIAVGSELLLGQIANTNAKFISNQLSELGINVFFHTVVGDNQLRLLDAIEIAEKRADLIIFSGGLGPTKDDLTKET
IAKHLGKELVSDDTALHYIEQFFAKQNRLMTDNNRKQALVLEGCDVLANHHGMAPGMFLKQNERIYILLPGPPKELEPMF
QFETKTKLAAVLQDGGVILSHVLRFYGIGEAELEVRIQRILEEQTNPTVAPLASDGEVTLRITAKAANEEQAMHLINIKA
KEILDIVGEYHYGVNDDSLASKLVEMLLENDLTIAAAESLTAGLFQSELAEISGVSGALIGGVVTYTEQAKIEQLGISEQ
LIETYSVVSSECAAEMALKVREKFKTNIGVGLTGAAGPASHAGQPAGTIWVAICIDEQAPITYKLQLSGSRNTNRLRAVK
FTYSFLMRELVKQGYKRINSI

Nucleotide


Download         Length: 1266 bp        

>NTDB_id=289167 DCE79_RS04750 WP_108711971.1 1060829..1062094(+) (cinA) [Lysinibacillus sp. 2017]
ATGAATGCAGAAATTATAGCGGTAGGATCTGAGTTATTATTAGGACAAATAGCGAACACGAATGCAAAATTTATTTCAAA
CCAACTATCAGAACTTGGGATTAATGTTTTTTTTCATACGGTGGTAGGAGATAATCAATTGAGATTGTTAGATGCAATTG
AAATTGCCGAGAAACGCGCGGATTTAATAATTTTTTCAGGCGGACTTGGACCAACGAAAGATGATTTAACGAAAGAAACG
ATTGCAAAACATTTAGGTAAAGAGCTTGTCAGCGACGACACTGCATTACACTATATCGAGCAATTCTTTGCAAAACAAAA
TCGACTGATGACGGATAATAATCGAAAGCAGGCACTTGTATTAGAGGGCTGTGACGTTTTAGCAAATCATCACGGGATGG
CGCCTGGGATGTTTTTAAAACAGAATGAACGGATATATATCTTATTACCAGGTCCTCCTAAAGAGCTTGAGCCGATGTTC
CAATTCGAAACAAAAACAAAATTAGCTGCTGTTTTACAAGATGGTGGTGTAATTTTATCGCATGTATTACGTTTTTATGG
TATTGGGGAAGCTGAATTAGAAGTGCGTATACAGCGCATTTTGGAAGAACAAACAAATCCGACAGTTGCACCACTTGCTT
CAGATGGTGAAGTGACATTACGTATTACGGCTAAAGCAGCAAATGAAGAGCAAGCAATGCACTTAATCAACATAAAAGCA
AAAGAAATCTTAGATATTGTTGGGGAATATCATTATGGTGTAAACGATGATTCCCTTGCCTCTAAATTGGTGGAAATGTT
ACTTGAGAACGATTTAACGATTGCAGCAGCAGAAAGTTTAACGGCTGGTTTGTTTCAATCTGAACTTGCGGAAATTTCAG
GGGTGAGCGGTGCGCTTATTGGCGGTGTTGTAACCTATACTGAACAAGCAAAAATAGAACAACTTGGAATTTCAGAACAA
CTTATCGAGACCTATAGTGTCGTGAGTAGTGAATGTGCAGCAGAAATGGCCTTAAAAGTACGTGAAAAATTTAAAACGAA
TATTGGGGTTGGCTTAACTGGAGCAGCAGGACCAGCCAGTCATGCTGGTCAACCTGCGGGGACAATTTGGGTAGCAATTT
GTATTGATGAACAAGCGCCGATTACGTACAAACTTCAGCTATCTGGTTCGCGCAATACAAACCGCTTACGTGCTGTGAAA
TTTACGTATAGCTTCTTAATGCGTGAACTTGTAAAGCAAGGATATAAAAGGATAAATTCAATTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-164)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S1GZB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.98

96.912

0.494
  cinA Streptococcus mitis SK321

43.868

100

0.442
  cinA Streptococcus mitis NCTC 12261

43.868

100

0.442
  cinA Streptococcus pneumoniae R6

43.468

100

0.435
  cinA Streptococcus pneumoniae TIGR4

43.468

100

0.435
  cinA Streptococcus pneumoniae Rx1

43.468

100

0.435
  cinA Streptococcus pneumoniae D39

43.23

100

0.432
  cinA Streptococcus mutans UA159

41.966

99.05

0.416

Multiple sequence alignment