Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   DBX26_RS12505 Genome accession   NZ_CP028943
Coordinates   2710472..2711518 (-) Length   348 a.a.
NCBI ID   WP_014232974.1    Uniprot ID   A0AAN0Y3S6
Organism   Vibrio sp. dhg     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2705472..2716518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DBX26_RS12485 (DBX26_12475) csrA 2705492..2705689 (-) 198 WP_004415691.1 carbon storage regulator CsrA -
  DBX26_RS12490 (DBX26_12480) - 2705781..2706968 (-) 1188 WP_014232971.1 aspartate kinase -
  DBX26_RS12495 (DBX26_12485) alaS 2707165..2709747 (-) 2583 WP_118119362.1 alanine--tRNA ligase -
  DBX26_RS12500 (DBX26_12490) recX 2709890..2710357 (-) 468 WP_014232973.1 recombination regulator RecX -
  DBX26_RS12505 (DBX26_12495) recA 2710472..2711518 (-) 1047 WP_014232974.1 recombinase RecA Machinery gene
  DBX26_RS12510 (DBX26_12500) pncC 2711709..2712200 (-) 492 WP_118119364.1 nicotinamide-nucleotide amidase -
  DBX26_RS12515 (DBX26_12505) mutS 2712285..2714846 (+) 2562 WP_118119366.1 DNA mismatch repair protein MutS -
  DBX26_RS12520 (DBX26_12510) rpoS 2714921..2715907 (-) 987 WP_024372915.1 RNA polymerase sigma factor RpoS Regulator

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37542.06 Da        Isoelectric Point: 5.1953

>NTDB_id=288739 DBX26_RS12505 WP_014232974.1 2710472..2711518(-) (recA) [Vibrio sp. dhg]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEVYGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVDIDALLVSQPDTGEQALEICDALARSGAIDVMVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELVDLGVKHKLVEKAGAWYSYNGDKIGQGKANACNYLREHTEVAQTIDK
KLREMLLSPAVAEGPEAGEMPEKKEEEF

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=288739 DBX26_RS12505 WP_014232974.1 2710472..2711518(-) (recA) [Vibrio sp. dhg]
ATGGACGAGAACAAACAGAAAGCGCTCGCCGCTGCGCTAGGTCAAATTGAAAAACAATTCGGTAAAGGCTCAATCATGCG
CCTTGGCGATAACCGCGCAATGGACGTAGAAACCATCTCAACGGGTTCTCTTTCTCTTGATATCGCTTTGGGTGCTGGTG
GCTTACCGATGGGTCGTATTGTCGAAGTATACGGTCCGGAATCTTCTGGTAAAACGACACTAACTCTTGAGCTTATTGCT
GCAGCACAGCGTGAAGGCAAAACTTGTGCGTTTATCGATGCGGAGCACGCTCTGGATCCTGTCTACGCGAAGAAGCTTGG
CGTAGATATCGATGCACTTTTGGTTTCTCAGCCTGATACGGGTGAGCAAGCGCTAGAAATCTGTGACGCATTAGCTCGCT
CTGGTGCCATCGACGTAATGGTTGTCGACTCTGTTGCAGCACTGACTCCAAAAGCAGAAATCGAAGGCGAAATGGGCGAC
AGCCACATGGGTCTTCAAGCTCGTATGCTTTCTCAAGCGATGCGTAAGCTAACAGGTAACCTGAAGCAGTCTAACTGTAT
GTGTATCTTCATTAACCAAATCCGTATGAAGATTGGTGTGATGTTCGGTAACCCAGAAACAACAACTGGCGGTAACGCAC
TTAAATTCTACGCATCGGTTCGTCTTGATATCCGCCGTACTGGCGCAATCAAAGAAGGCGACGAAGTTGTGGGTAACGAA
ACTCGCATCAAAGTAGTTAAGAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAGATCATGTACGGTCAAGGCTT
TAACCGCGAAGGTGAGCTGGTAGACTTAGGCGTGAAGCACAAATTGGTTGAAAAAGCAGGCGCTTGGTACAGCTACAATG
GCGACAAGATCGGTCAGGGCAAGGCAAATGCTTGTAATTACCTGCGTGAACATACAGAAGTTGCTCAGACTATCGACAAG
AAACTTCGTGAGATGCTTTTGTCTCCAGCTGTAGCTGAGGGACCTGAAGCCGGTGAAATGCCAGAGAAGAAAGAAGAAGA
GTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

89.518

100

0.908
  recA Vibrio cholerae strain A1552

89.518

100

0.908
  recA Acinetobacter baumannii D1279779

74.39

94.253

0.701
  recA Pseudomonas stutzeri DSM 10701

74.312

93.966

0.698
  recA Acinetobacter baylyi ADP1

73.636

94.828

0.698
  recA Glaesserella parasuis strain SC1401

69.939

93.678

0.655
  recA Neisseria gonorrhoeae MS11

64.943

100

0.649
  recA Neisseria gonorrhoeae MS11

64.943

100

0.649
  recA Neisseria gonorrhoeae strain FA1090

64.943

100

0.649
  recA Ralstonia pseudosolanacearum GMI1000

70.74

89.368

0.632
  recA Streptococcus mitis SK321

59.249

99.425

0.589
  recA Helicobacter pylori strain NCTC11637

58.739

100

0.589
  recA Helicobacter pylori 26695

58.453

100

0.586
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.475

98.563

0.586
  recA Streptococcus pneumoniae D39

62.229

92.816

0.578
  recA Streptococcus pneumoniae R6

62.229

92.816

0.578
  recA Streptococcus pneumoniae TIGR4

62.229

92.816

0.578
  recA Streptococcus pneumoniae Rx1

62.229

92.816

0.578
  recA Bacillus subtilis subsp. subtilis str. 168

62.305

92.241

0.575
  recA Latilactobacillus sakei subsp. sakei 23K

57.803

99.425

0.575
  recA Streptococcus pyogenes NZ131

60.923

93.391

0.569
  recA Streptococcus mitis NCTC 12261

60.991

92.816

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.371

92.241

0.566
  recA Streptococcus mutans UA159

60.308

93.391

0.563
  recA Lactococcus lactis subsp. cremoris KW2

60.681

92.816

0.563
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

58.61

95.115

0.557

Multiple sequence alignment