Detailed information NTG0288741

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: DBX26_RS12520
• Genome accession: NZ_CP028943
• Coordinates: 2714921..2715907 (-)
• Length: 328 a.a.
• NCBI ID: WP_024372915.1
• Uniprot ID: -
• Organism: Vibrio sp. dhg
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 2709921..2720907

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DBX26_RS12505 (DBX26_12495)	recA	2710472..2711518 (-)	1047	WP_014232974.1	recombinase RecA	Machinery gene
DBX26_RS12510 (DBX26_12500)	pncC	2711709..2712200 (-)	492	WP_118119364.1	nicotinamide-nucleotide amidase	-
DBX26_RS12515 (DBX26_12505)	mutS	2712285..2714846 (+)	2562	WP_118119366.1	DNA mismatch repair protein MutS	-
DBX26_RS12520 (DBX26_12510)	rpoS	2714921..2715907 (-)	987	WP_024372915.1	RNA polymerase sigma factor RpoS	Regulator
DBX26_RS12525 (DBX26_12515)	-	2715988..2716911 (-)	924	WP_118119368.1	peptidoglycan DD-metalloendopeptidase family protein	-
DBX26_RS12530 (DBX26_12520)	-	2716925..2717551 (-)	627	WP_014232979.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
DBX26_RS12535 (DBX26_12525)	surE	2717551..2718297 (-)	747	WP_024372917.1	5'/3'-nucleotidase SurE	-
DBX26_RS12540 (DBX26_12530)	truD	2718327..2719370 (-)	1044	WP_020333968.1	tRNA pseudouridine(13) synthase TruD	-
DBX26_RS12545 (DBX26_12535)	ispF	2719413..2719892 (-)	480	WP_014232982.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
DBX26_RS12550 (DBX26_12540)	ispD	2719906..2720613 (-)	708	WP_118119370.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
DBX26_RS12555 (DBX26_12545)	ftsB	2720615..2720896 (-)	282	WP_014232984.1	cell division protein FtsB	-

Sequence

Protein

• Length: 328 a.a.
• Molecular weight: 37315.19 Da
• Isoelectric Point: 4.7268

>NTDB_id=288741 DBX26_RS12520 WP_024372915.1 2714921..2715907(-) (rpoS) [Vibrio sp. dhg]
MSISNTVTKVEEFDFDDESVKTVASQLGKSSSTESKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALR
GDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTI
RLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDGNNSD
PEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREVLIKQGLNME
NLFNVEDD

Nucleotide

• Length: 987 bp

>NTDB_id=288741 DBX26_RS12520 WP_024372915.1 2714921..2715907(-) (rpoS) [Vibrio sp. dhg]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTTGATTTTGACGATGAGTCAGTGAAGACCGTTGCGAGTCAACT
CGGAAAATCATCATCCACAGAAAGCAAAACTGCTGCGCGTGAAGAATTCGATGCAAGCAGCAAGAGCTTAGATGCCACCC
AATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTCACTGCTGAAGAAGAAGTGCTTTATGCTCGACGCGCATTACGT
GGCGACGAAGCTGCTCGTAAGCGCATGATCGAAAGTAACTTACGCTTAGTTGTAAAGATCTCTCGTCGTTACAGCAACCG
CGGCTTGGCCCTTCTGGACCTTATTGAAGAAGGTAACCTTGGCTTGATCCGTGCAGTTGAGAAATTCGACCCAGAACGCG
GTTTCCGTTTCTCTACCTATGCAACATGGTGGATTCGACAAACGATCGAACGTGCGTTGATGAACCAAACGCGTACCATT
CGTTTACCGATTCACGTTGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAGAAGCTCGATCATGA
ACCAACAGCCGAAGAGATTGCAGCGCAACTTGATATTCCTGTTGAAGATGTCAGCAAAATGCTTCGCTTGAATGAGCGTA
TTAGTTCTGTCGACACGCCAATTGGTGGTGATGGTGAAAAAGCACTACTTGATATTATTCCAGATGGTAACAATTCTGAC
CCTGAAGTTTCGACACAAGATGACGATATCAAGTCTTCTCTAATCCATTGGCTTGAAGAGTTGAACCCGAAACAGAAAGA
AGTGTTGGCTCGTCGTTTTGGTTTATTAGGTTATGAACCTTCAACGCTGGAAGAAGTAGGGCGTGAAATTGGACTTACTC
GTGAACGCGTTCGCCAGATCCAAGTGGAAGGTCTACGTCGTCTACGCGAAGTATTGATTAAACAAGGCCTGAATATGGAA
AACTTGTTTAACGTCGAAGATGACTAA

Domains

Predicted by InterproScan.

• Sigma-70, region 4 (Sigma70_r4) (257-310)

• Sigma-70 region 2 (Sigma70_r2) (89-158)

• Sigma-70 region 3 (Sigma70_r3) (169-242)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (51-84)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	84.132	100	0.857