Detailed information    

insolico Bioinformatically predicted

Overview


Name   recA   Type   Machinery gene
Locus tag   ANAE109_RS19240 Genome accession   NC_009675
Coordinates   4373082..4374104 (-) Length   340 a.a.
NCBI ID   WP_012098557.1    Uniprot ID   A7HGT3
Organism   Anaeromyxobacter sp. Fw109-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 4368082..4379104
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANAE109_RS19235 (Anae109_3749) - 4370756..4372573 (-) 1818 WP_012098556.1 MopE-related protein -
  ANAE109_RS19240 (Anae109_3750) recA 4373082..4374104 (-) 1023 WP_012098557.1 recombinase RecA Machinery gene
  ANAE109_RS19245 (Anae109_3751) comM 4374165..4375685 (-) 1521 WP_012098558.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ANAE109_RS19250 (Anae109_3752) - 4375875..4376858 (-) 984 WP_012098559.1 YafY family protein -
  ANAE109_RS19255 (Anae109_3753) - 4376922..4377470 (+) 549 WP_012098560.1 dihydrofolate reductase family protein -
  ANAE109_RS19260 (Anae109_3754) - 4377467..4378297 (+) 831 WP_012098561.1 NAD(P)H-binding protein -
  ANAE109_RS19265 (Anae109_3755) - 4378313..4379026 (-) 714 WP_049768643.1 uracil-DNA glycosylase -

Sequence


Protein


Download         Length: 340 a.a.        Molecular weight: 35941.24 Da        Isoelectric Point: 9.1902

>NTDB_id=28679 ANAE109_RS19240 WP_012098557.1 4373082..4374104(-) (recA) [Anaeromyxobacter sp. Fw109-5]
MTKLSDKVKALGQALAGIEKQFGKGSIMRLGDGAEPAPVAVVPTGSLGLDLALGVGGLPRGRVVEIYGPESSGKTTLALH
AIAEVQRQGGVAAFIDAEHALDVTYARRLGVSLAELLVSQPDTGEQALEIAEQLVRSGAIDLIVVDSVAALVPKAEIEGE
MGDAHMGVQARLMSQALRKLTAVVSRNQSLVVFINQIRMKIGVVFGNPETTTGGHALKFYASVRLDIRRIGQVKDGDQVV
GSRTRVKVVKNKVAPPFREAEFDVRYGTGVDRHGEALDLGVERGAVEKSGAYFALDGERIGQGRERAIEWLRANPEAYER
LAARVRGSVSAPAPVIAAAG

Nucleotide


Download         Length: 1023 bp        

>NTDB_id=28679 ANAE109_RS19240 WP_012098557.1 4373082..4374104(-) (recA) [Anaeromyxobacter sp. Fw109-5]
GTGACGAAGCTGAGCGACAAGGTGAAGGCCCTCGGGCAGGCGCTGGCCGGCATCGAGAAGCAGTTCGGGAAGGGGAGCAT
CATGCGGCTCGGCGACGGCGCCGAGCCCGCGCCGGTGGCGGTCGTGCCCACCGGCTCCCTCGGGCTCGACCTCGCGCTCG
GGGTCGGGGGCCTCCCGCGCGGGCGCGTCGTGGAGATCTACGGGCCGGAGTCCTCGGGCAAGACGACGCTCGCGCTCCAC
GCCATCGCCGAGGTGCAGCGGCAGGGCGGCGTGGCGGCGTTCATCGACGCCGAGCACGCGCTCGACGTGACCTACGCGCG
CCGCCTGGGGGTGAGCCTCGCGGAGCTGCTCGTCTCGCAGCCCGACACGGGCGAGCAGGCCCTGGAGATCGCCGAGCAGC
TCGTCCGCTCCGGCGCCATCGACCTCATCGTGGTGGACTCGGTCGCGGCGCTCGTGCCCAAGGCGGAGATCGAGGGCGAG
ATGGGCGACGCGCACATGGGCGTGCAGGCGCGGCTCATGAGCCAGGCGCTCCGCAAGCTCACCGCCGTGGTCTCGCGAAA
CCAGTCGCTCGTGGTGTTCATCAACCAGATCCGGATGAAGATCGGCGTGGTGTTCGGGAACCCCGAGACCACCACCGGGG
GTCACGCCCTCAAGTTCTACGCGTCGGTCCGGCTCGACATCCGCCGCATCGGCCAGGTGAAGGACGGGGACCAGGTGGTC
GGCAGCCGCACGCGCGTGAAGGTGGTGAAGAACAAGGTGGCGCCGCCGTTCCGGGAAGCGGAGTTCGACGTCCGCTACGG
CACGGGCGTCGACCGGCACGGCGAGGCGCTCGACCTCGGGGTGGAGCGCGGCGCCGTCGAGAAGTCCGGCGCGTACTTCG
CCCTCGACGGCGAGCGCATCGGGCAGGGGCGCGAGCGGGCAATCGAGTGGCTCCGCGCGAACCCGGAGGCCTACGAGCGG
CTCGCGGCGCGGGTGCGCGGGAGCGTGAGCGCGCCGGCGCCGGTGATCGCGGCTGCGGGGTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A7HGT3

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

73.786

90.882

0.671

  recA Glaesserella parasuis strain SC1401

66.467

98.235

0.653

  recA Pseudomonas stutzeri DSM 10701

66.667

95.294

0.635

  recA Acinetobacter baylyi ADP1

67.29

94.412

0.635

  recA Acinetobacter baumannii D1279779

66.044

94.412

0.624

  recA Neisseria gonorrhoeae MS11

65.109

94.412

0.615

  recA Neisseria gonorrhoeae MS11

65.109

94.412

0.615

  recA Neisseria gonorrhoeae strain FA1090

65.109

94.412

0.615

  recA Vibrio cholerae strain A1552

63.914

96.176

0.615

  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.914

96.176

0.615

  recA Bacillus subtilis subsp. subtilis str. 168

63.467

95

0.603

  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.329

97.353

0.597

  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.35

95.882

0.588

  recA Helicobacter pylori strain NCTC11637

59.036

97.647

0.576

  recA Helicobacter pylori 26695

59.036

97.647

0.576

  recA Latilactobacillus sakei subsp. sakei 23K

60.815

93.824

0.571

  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.61

97.353

0.571

  recA Streptococcus mitis SK321

58.896

95.882

0.565

  recA Streptococcus mitis NCTC 12261

58.896

95.882

0.565

  recA Streptococcus pneumoniae Rx1

58.589

95.882

0.562

  recA Streptococcus pneumoniae TIGR4

58.589

95.882

0.562

  recA Streptococcus pneumoniae D39

58.589

95.882

0.562

  recA Streptococcus pneumoniae R6

58.589

95.882

0.562

  recA Lactococcus lactis subsp. cremoris KW2

58.025

95.294

0.553

  recA Streptococcus mutans UA159

57.669

95.882

0.553

  recA Streptococcus pyogenes NZ131

58.385

94.706

0.553


Multiple sequence alignment