Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   ANAE109_RS19245 Genome accession   NC_009675
Coordinates   4374165..4375685 (-) Length   506 a.a.
NCBI ID   WP_012098558.1    Uniprot ID   A7HGT4
Organism   Anaeromyxobacter sp. Fw109-5     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4369165..4380685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ANAE109_RS19235 (Anae109_3749) - 4370756..4372573 (-) 1818 WP_012098556.1 MopE-related protein -
  ANAE109_RS19240 (Anae109_3750) recA 4373082..4374104 (-) 1023 WP_012098557.1 recombinase RecA Machinery gene
  ANAE109_RS19245 (Anae109_3751) comM 4374165..4375685 (-) 1521 WP_012098558.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  ANAE109_RS19250 (Anae109_3752) - 4375875..4376858 (-) 984 WP_012098559.1 YafY family protein -
  ANAE109_RS19255 (Anae109_3753) - 4376922..4377470 (+) 549 WP_012098560.1 dihydrofolate reductase family protein -
  ANAE109_RS19260 (Anae109_3754) - 4377467..4378297 (+) 831 WP_012098561.1 NAD(P)H-binding protein -
  ANAE109_RS19265 (Anae109_3755) - 4378313..4379026 (-) 714 WP_049768643.1 uracil-DNA glycosylase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 53375.64 Da        Isoelectric Point: 10.3163

>NTDB_id=28680 ANAE109_RS19245 WP_012098558.1 4374165..4375685(-) (comM) [Anaeromyxobacter sp. Fw109-5]
MLVRIRSGAVLGVQAIPVDVEVESTVGMPGFHLVGLATGAVQEAKVRVAAAVRNLGVTLPQKRITVNLAPADLRKDGTGF
DLPMAIGVLAAAEEIPAEAVAQVHFVGELALSGELKAGRGVLPLAIEARRAAARAIVVPEANALEASIVEGVRVLSARHL
GDVVAWARGAASLRPPLGIAPPPPEGVPIDLADVTGQENAKRALEIAAAGAHNLLFFGPPGSGKTMLARRLPTLLPPLAF
EEALEATVVHSVAGLTRHRGLLTTRPFRAPHHSISDAGLVGGTSVPRPGEVSLAHHGVLFLDELPEFRRHVLEALRQPLE
DGEVTIARAGRSVTYPAEVTLVAAMNPCPCGYHGDRRRRCRCTAHELLAYRRRISGPLLDRIDLHVDVPSLAAPLLGEPP
SAAATSAEVRARVERAREVQRARAGGRGSGVNARLRGGTLRKVATPDEGGRRILQGAVEKLGLSARAHDKVLRVARTIAD
LEGSDAVRALHVAEAVQYRGLDRPIF

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=28680 ANAE109_RS19245 WP_012098558.1 4374165..4375685(-) (comM) [Anaeromyxobacter sp. Fw109-5]
GTGCTCGTCCGCATCCGCTCCGGCGCCGTCCTCGGCGTGCAGGCGATCCCCGTCGACGTGGAGGTCGAGTCCACCGTCGG
GATGCCCGGCTTCCACCTCGTGGGGCTCGCGACGGGCGCGGTGCAGGAGGCGAAGGTCCGGGTCGCCGCGGCGGTGCGGA
ACCTGGGGGTGACGCTGCCGCAGAAGCGCATCACCGTGAACCTCGCGCCGGCCGATCTGCGCAAGGACGGAACCGGCTTC
GATCTGCCCATGGCGATCGGGGTGCTGGCCGCCGCCGAGGAGATCCCCGCCGAGGCGGTGGCGCAGGTGCACTTCGTCGG
CGAGCTCGCGCTCTCCGGCGAGCTCAAGGCGGGGCGCGGCGTGCTGCCGCTCGCGATCGAGGCGCGCCGGGCGGCGGCGC
GCGCCATCGTGGTGCCCGAGGCGAACGCGCTCGAGGCGTCGATCGTCGAGGGCGTGAGGGTCCTCTCCGCCCGGCACCTG
GGCGACGTGGTCGCGTGGGCGCGAGGCGCGGCTTCGCTCCGGCCACCGCTCGGGATCGCGCCGCCGCCTCCGGAGGGGGT
GCCCATCGATCTCGCGGACGTCACCGGCCAGGAGAACGCGAAGCGGGCGCTGGAGATCGCCGCGGCGGGCGCGCACAACC
TCCTCTTCTTCGGTCCTCCCGGCAGCGGCAAGACGATGCTCGCGCGCCGGCTGCCGACGCTGCTCCCGCCCCTCGCGTTC
GAGGAGGCGCTCGAGGCCACCGTGGTGCACAGCGTGGCCGGGCTGACGCGCCACCGCGGGCTCCTCACCACCCGGCCCTT
CCGCGCCCCGCACCACTCCATCTCCGACGCCGGGCTCGTCGGCGGGACCAGCGTCCCGCGCCCGGGCGAGGTCTCGCTCG
CGCACCACGGCGTGCTGTTCCTGGACGAGCTGCCCGAGTTCCGGCGCCACGTGCTGGAGGCGCTGCGGCAGCCGCTGGAG
GACGGCGAGGTCACCATCGCGCGGGCCGGCCGGAGCGTCACCTACCCCGCCGAGGTCACGCTCGTGGCCGCGATGAATCC
CTGCCCGTGCGGCTACCACGGCGACCGGCGCCGGCGCTGCCGCTGCACCGCTCACGAGCTGCTCGCCTACCGGCGGCGCA
TCTCCGGGCCGCTGCTCGATCGCATCGACCTGCACGTGGACGTGCCGTCGCTGGCGGCGCCCCTGCTCGGCGAGCCCCCC
TCGGCCGCCGCGACGAGCGCGGAGGTGCGGGCGCGCGTGGAGCGCGCGCGGGAGGTGCAGCGCGCGCGCGCGGGCGGGCG
CGGCTCGGGCGTGAACGCCCGGCTGCGGGGCGGCACGCTGCGCAAGGTCGCCACGCCCGACGAGGGCGGGCGGCGGATCC
TCCAGGGCGCCGTCGAGAAGCTGGGGCTCTCCGCGCGGGCGCACGACAAGGTGCTGCGCGTCGCGCGGACCATCGCGGAC
CTCGAGGGCTCGGACGCGGTGCGCGCGCTGCACGTCGCGGAGGCGGTGCAGTACCGCGGCCTCGACCGGCCGATCTTCTG
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-499)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(20-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7HGT4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

48.214

99.605

0.48
  comM Vibrio cholerae strain A1552

47.024

99.605

0.468
  comM Haemophilus influenzae Rd KW20

46.457

100

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.184

100

0.466
  comM Glaesserella parasuis strain SC1401

45.238

99.605

0.451
  comM Legionella pneumophila str. Paris

42.545

99.407

0.423
  comM Legionella pneumophila strain ERS1305867

42.545

99.407

0.423

Multiple sequence alignment