Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   Tharo_RS15005 Genome accession   NZ_CP028339
Coordinates   3167831..3168865 (+) Length   344 a.a.
NCBI ID   WP_107221900.1    Uniprot ID   A0A2R4BR84
Organism   Thauera aromatica K172     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3162831..3173865
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Tharo_RS14980 (Tharo_2961) - 3163631..3164527 (+) 897 WP_107221895.1 U32 family peptidase -
  Tharo_RS14985 (Tharo_2962) - 3164597..3165130 (+) 534 WP_107221896.1 SCP2 sterol-binding domain-containing protein -
  Tharo_RS14990 (Tharo_2963) thiL 3165283..3166284 (+) 1002 WP_107221897.1 thiamine-phosphate kinase -
  Tharo_RS14995 (Tharo_2964) - 3166559..3167041 (+) 483 WP_107221898.1 phosphatidylglycerophosphatase A -
  Tharo_RS15000 (Tharo_2965) - 3167094..3167582 (+) 489 WP_107221899.1 nicotinamide-nucleotide amidohydrolase family protein -
  Tharo_RS15005 (Tharo_2966) recA 3167831..3168865 (+) 1035 WP_107221900.1 recombinase RecA Machinery gene
  Tharo_RS15010 (Tharo_2967) - 3168882..3169331 (+) 450 WP_107221901.1 regulatory protein RecX -
  Tharo_RS15015 (Tharo_2968) lptB 3169318..3170043 (+) 726 WP_107221902.1 LPS export ABC transporter ATP-binding protein -
  Tharo_RS15020 (Tharo_2969) rpoN/rpoN1 3170060..3171478 (+) 1419 WP_107221903.1 RNA polymerase factor sigma-54 Machinery gene
  Tharo_RS15025 (Tharo_2970) raiA 3171496..3171819 (+) 324 WP_075147869.1 ribosome-associated translation inhibitor RaiA -
  Tharo_RS15030 (Tharo_2971) ptsN 3171956..3172441 (+) 486 WP_107221904.1 PTS IIA-like nitrogen regulatory protein PtsN -
  Tharo_RS15035 (Tharo_2972) hprK 3172410..3173357 (+) 948 WP_107221905.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36685.99 Da        Isoelectric Point: 5.3230

>NTDB_id=284229 Tharo_RS15005 WP_107221900.1 3167831..3168865(+) (recA) [Thauera aromatica K172]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNIEDLLISQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVVGS
ETRVKVVKNKVAPPFKEAHFDILYGEGISREGEIIDLGVDHKIVDKSGAWYAYQGDKIGQGKDNSREFLRNNPALAREIE
NKVRAAVGLPELAAAGAQPAAAEA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=284229 Tharo_RS15005 WP_107221900.1 3167831..3168865(+) (recA) [Thauera aromatica K172]
ATGGACGACAACAAGGCCAAGGCCCTCGCTGCCGCGCTTTCGCAGATCGAAAAACAGTTCGGCAAGGGCTCGATCATGCG
CATGGGCGACGGCAACGTCGAACGCGACATCCAGACCGTGTCTACCGGCTCGCTCGGGCTCGACATCGCGCTCGGCCTCG
GCGGCCTGCCGCGCGGCCGGGTGGTCGAAATCTACGGCCCCGAGTCTTCGGGCAAGACCACGCTGACGCTGCAGGTCATC
GCCGAGATGCAGAAGCTCGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACGTCGGCTACGCCGAAAAGCT
CGGCGTGAACATCGAGGACCTGCTGATCTCGCAGCCCGACACCGGCGAGCAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCGGGCGGGGTGGACATCGTCGTCATCGACTCGGTCGCCGCGCTCACGCCGAAGGCCGAAATCGAAGGCGAGATGGGC
GACCAGCTGCCCGGCCTGCAGGCGCGCCTGATGAGCCAGGCGCTCCGGAAGCTCACCGCCAACATCAAGCGCACCAACAC
GTTGGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCGGAAACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCTTCGGTGCGGATGGACATCCGCCGCACCGGCACGATCAAGAAGGGCGACGAGGTCGTCGGCTCC
GAAACCCGGGTCAAGGTGGTCAAGAACAAGGTCGCACCGCCCTTCAAGGAAGCCCACTTCGACATCCTGTACGGCGAGGG
TATTTCGCGCGAGGGCGAGATCATCGACCTCGGCGTCGACCACAAGATCGTCGACAAGTCCGGGGCCTGGTACGCCTACC
AGGGCGACAAGATCGGCCAGGGCAAGGACAACTCGCGCGAGTTCCTGCGCAACAACCCGGCGCTCGCGCGCGAAATCGAA
AACAAGGTGCGCGCCGCAGTCGGCCTGCCCGAGCTGGCCGCGGCAGGCGCGCAGCCGGCCGCGGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R4BR84

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.759

92.733

0.767
  recA Pseudomonas stutzeri DSM 10701

73.314

99.128

0.727
  recA Acinetobacter baylyi ADP1

70.968

99.128

0.703
  recA Neisseria gonorrhoeae MS11

71.006

98.256

0.698
  recA Neisseria gonorrhoeae MS11

71.006

98.256

0.698
  recA Neisseria gonorrhoeae strain FA1090

71.006

98.256

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.205

96.221

0.695
  recA Vibrio cholerae strain A1552

72.205

96.221

0.695
  recA Acinetobacter baumannii D1279779

72.84

94.186

0.686
  recA Glaesserella parasuis strain SC1401

70.497

93.605

0.66
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.988

95.349

0.648
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.455

95.93

0.628
  recA Helicobacter pylori strain NCTC11637

64.759

96.512

0.625
  recA Helicobacter pylori 26695

64.759

96.512

0.625
  recA Bacillus subtilis subsp. subtilis str. 168

65.046

95.64

0.622
  recA Latilactobacillus sakei subsp. sakei 23K

62.727

95.93

0.602
  recA Streptococcus mutans UA159

60.661

96.802

0.587
  recA Streptococcus mitis SK321

61.094

95.64

0.584
  recA Streptococcus mitis NCTC 12261

61.094

95.64

0.584
  recA Streptococcus pneumoniae D39

61.094

95.64

0.584
  recA Streptococcus pneumoniae R6

61.094

95.64

0.584
  recA Streptococcus pneumoniae TIGR4

61.094

95.64

0.584
  recA Streptococcus pneumoniae Rx1

61.094

95.64

0.584
  recA Streptococcus pyogenes NZ131

60.303

95.93

0.578
  recA Lactococcus lactis subsp. cremoris KW2

60.856

95.058

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.568

94.186

0.561

Multiple sequence alignment