Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C1N55_RS06580 Genome accession   NZ_CP028083
Coordinates   1347092..1348159 (+) Length   355 a.a.
NCBI ID   WP_305036285.1    Uniprot ID   -
Organism   Lysinibacillus sp. SGAir0095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1342092..1353159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N55_RS06555 (C1N55_06590) - 1342192..1342449 (+) 258 WP_137730556.1 DUF3243 domain-containing protein -
  C1N55_RS06560 (C1N55_06595) - 1342850..1343650 (+) 801 WP_137728082.1 DUF3388 domain-containing protein -
  C1N55_RS06565 (C1N55_06600) - 1343849..1344751 (+) 903 WP_370452591.1 RodZ domain-containing protein -
  C1N55_RS06570 (C1N55_06605) pgsA 1344904..1345482 (+) 579 WP_137728084.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C1N55_RS06575 (C1N55_06610) cinA 1345495..1346748 (+) 1254 WP_137728085.1 competence/damage-inducible protein A Machinery gene
  C1N55_RS06580 (C1N55_06615) recA 1347092..1348159 (+) 1068 WP_305036285.1 recombinase RecA Machinery gene
  C1N55_RS06585 - 1348377..1348559 (+) 183 WP_137728086.1 hypothetical protein -
  C1N55_RS06590 (C1N55_06620) rny 1348956..1350509 (+) 1554 WP_137730558.1 ribonuclease Y -
  C1N55_RS06595 (C1N55_06625) - 1350919..1351635 (+) 717 WP_137728087.1 GDSL-type esterase/lipase family protein -
  C1N55_RS20460 - 1351817..1351987 (+) 171 WP_168193807.1 hypothetical protein -

Sequence

Protein


Download         Length: 355 a.a.        Molecular weight: 38501.80 Da        Isoelectric Point: 4.7987

>NTDB_id=281143 C1N55_RS06580 WP_305036285.1 1347092..1348159(+) (recA) [Lysinibacillus sp. SGAir0095]
MSNDRKAALDMALKQIEKQFGKGSIMKLGEQSDRQMETSSSGSLAIDAALGVGGYPRGRIVEIYGPESSGKTTVALHAIA
EIQAKGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGD
SHMGLQARLMSQALRKLSGIINKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYASIRLEVRRAETIKQGTEMIGNK
TKIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYAYDGERIGQGRENAKAFLKANPEIREKVSN
QIRESYGMTANSYTIGAHDEEEEMDKELALLLDEE

Nucleotide


Download         Length: 1068 bp        

>NTDB_id=281143 C1N55_RS06580 WP_305036285.1 1347092..1348159(+) (recA) [Lysinibacillus sp. SGAir0095]
TTGAGTAATGATCGTAAAGCTGCCTTAGATATGGCGTTAAAGCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGAA
GCTAGGTGAACAATCAGATCGCCAAATGGAGACATCTTCAAGTGGTTCATTAGCAATTGATGCAGCATTAGGTGTTGGTG
GTTATCCAAGAGGGCGTATCGTAGAAATCTACGGTCCAGAATCATCAGGTAAAACAACTGTAGCCCTACATGCAATCGCT
GAAATCCAAGCAAAAGGTGGACAAGCTGCATTTATCGATGCGGAGCATGCACTAGATCCAGTTTACGCACAAAAATTAGG
TGTTAACATTGATGAGCTATTACTTTCTCAACCAGACACTGGTGAGCAAGCATTAGAAATCGCTGAAGCATTAGTACGCA
GTGGTGCGATTGACATTATCGTAATCGACTCAGTTGCTGCCCTAGTACCAAAAGCAGAAATCGAAGGCGAAATGGGTGAC
TCTCACATGGGTCTTCAAGCTCGTTTAATGTCTCAAGCATTACGTAAACTCTCAGGGATCATCAACAAATCTAATACACT
AGCAATCTTTATCAACCAAGTACGTGAAAAAATCGGTGTTATGTTCGGTAACCCTGAAACAACTACTGGTGGACGTGCCC
TTAAATTCTACGCGTCAATTCGTCTTGAAGTACGTCGTGCAGAAACAATTAAACAAGGCACTGAAATGATCGGGAACAAA
ACAAAAATTAAAGTCGTGAAAAACAAAGTAGCGCCACCATTCCGTACTGCAGAAGTAGACATCATGTATGGTGAAGGAAT
ATCCAAAGAAGGCGAAATCGTCGACATCGGTGCAGAACTAGATATCATCCAAAAAAGCGGCTCATGGTACGCTTATGACG
GCGAACGCATTGGTCAAGGTAGAGAAAATGCTAAAGCCTTCCTTAAAGCAAATCCTGAAATCCGTGAAAAAGTATCGAAC
CAAATCCGTGAATCTTACGGCATGACAGCCAACTCATACACAATTGGTGCGCATGACGAAGAAGAAGAAATGGACAAAGA
ACTAGCTTTATTACTAGATGAAGAATAG

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.763

92.676

0.758
  recA Latilactobacillus sakei subsp. sakei 23K

73.394

92.113

0.676
  recA Streptococcus mutans UA159

63.636

100

0.651
  recA Streptococcus pneumoniae TIGR4

62.912

100

0.645
  recA Streptococcus pneumoniae Rx1

62.912

100

0.645
  recA Streptococcus pneumoniae D39

62.912

100

0.645
  recA Streptococcus pneumoniae R6

62.912

100

0.645
  recA Streptococcus pyogenes NZ131

63.585

100

0.639
  recA Neisseria gonorrhoeae MS11

65.306

96.62

0.631
  recA Neisseria gonorrhoeae MS11

65.306

96.62

0.631
  recA Neisseria gonorrhoeae strain FA1090

65.306

96.62

0.631
  recA Streptococcus mitis NCTC 12261

67.173

92.676

0.623
  recA Streptococcus mitis SK321

66.869

92.676

0.62
  recA Glaesserella parasuis strain SC1401

63.953

96.901

0.62
  recA Ralstonia pseudosolanacearum GMI1000

65.854

92.394

0.608
  recA Acinetobacter baylyi ADP1

62.974

96.62

0.608
  recA Lactococcus lactis subsp. cremoris KW2

64.865

93.803

0.608
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.628

96.901

0.597
  recA Vibrio cholerae strain A1552

65.432

91.268

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.432

91.268

0.597
  recA Acinetobacter baumannii D1279779

61.404

96.338

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

92.676

0.592
  recA Pseudomonas stutzeri DSM 10701

62.727

92.958

0.583
  recA Helicobacter pylori 26695

61.28

92.394

0.566
  recA Helicobacter pylori strain NCTC11637

61.28

92.394

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.112

90.704

0.563

Multiple sequence alignment