Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C1N55_RS06575 Genome accession   NZ_CP028083
Coordinates   1345495..1346748 (+) Length   417 a.a.
NCBI ID   WP_137728085.1    Uniprot ID   A0A4P8S641
Organism   Lysinibacillus sp. SGAir0095     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1340495..1351748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C1N55_RS06550 (C1N55_06585) ymfI 1341416..1342144 (+) 729 WP_137728081.1 elongation factor P 5-aminopentanone reductase -
  C1N55_RS06555 (C1N55_06590) - 1342192..1342449 (+) 258 WP_137730556.1 DUF3243 domain-containing protein -
  C1N55_RS06560 (C1N55_06595) - 1342850..1343650 (+) 801 WP_137728082.1 DUF3388 domain-containing protein -
  C1N55_RS06565 (C1N55_06600) - 1343849..1344751 (+) 903 WP_370452591.1 RodZ domain-containing protein -
  C1N55_RS06570 (C1N55_06605) pgsA 1344904..1345482 (+) 579 WP_137728084.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C1N55_RS06575 (C1N55_06610) cinA 1345495..1346748 (+) 1254 WP_137728085.1 competence/damage-inducible protein A Machinery gene
  C1N55_RS06580 (C1N55_06615) recA 1347092..1348159 (+) 1068 WP_305036285.1 recombinase RecA Machinery gene
  C1N55_RS06585 - 1348377..1348559 (+) 183 WP_137728086.1 hypothetical protein -
  C1N55_RS06590 (C1N55_06620) rny 1348956..1350509 (+) 1554 WP_137730558.1 ribonuclease Y -
  C1N55_RS06595 (C1N55_06625) - 1350919..1351635 (+) 717 WP_137728087.1 GDSL-type esterase/lipase family protein -

Sequence

Protein


Download         Length: 417 a.a.        Molecular weight: 44835.24 Da        Isoelectric Point: 4.6792

>NTDB_id=281142 C1N55_RS06575 WP_137728085.1 1345495..1346748(+) (cinA) [Lysinibacillus sp. SGAir0095]
MNAEIIAVGSELLLGQIANTNAKFISTQLSELGINVFYHTVVGDNAARLKSAIEIAESRADLIIFSGGLGPTKDDLTKET
IAAHLGLPLVMDDVALSFIEEFFAARGRGMTENNRKQALILEGSEVLANHHGMAPGMLLEKNGNTYILLPGPPKELEPMF
QFEAKPILAALLNDGGVIQSHVLRFYGIGEAELEDRVQDILDSQTNPTVAPLASDGEVTLRITARAQNPEEAWTLIKEKE
AEILAIVGEYHYGYNDDSLASKLVEMLMHNNLTISAAESLTAGLFQSELAEIPGVGCSLVGGVVTYTPEAKMSQLGIEKS
LLDKCGIVSSECAGSMAGKVREKFGTDIGVGLTGAAGPDPHDGQAPGTIWLGFSIGDSEHTHKLQLQGMRNTNRIRTVKF
ACSYLMRLLVEKGYEKI

Nucleotide


Download         Length: 1254 bp        

>NTDB_id=281142 C1N55_RS06575 WP_137728085.1 1345495..1346748(+) (cinA) [Lysinibacillus sp. SGAir0095]
ATGAATGCTGAAATTATTGCTGTTGGCTCAGAGCTGCTGCTTGGGCAAATTGCCAATACAAACGCGAAATTCATCTCAAC
GCAGTTATCTGAGCTCGGCATTAATGTCTTTTACCATACAGTTGTCGGGGATAATGCGGCTCGTTTGAAAAGTGCCATTG
AAATTGCTGAATCTCGTGCAGATTTAATCATTTTCTCTGGCGGACTTGGACCGACTAAGGATGATTTAACAAAAGAAACG
ATTGCAGCACATCTAGGTCTCCCTTTAGTGATGGACGATGTGGCTTTGTCCTTTATCGAGGAATTTTTTGCAGCACGTGG
GCGCGGGATGACCGAAAACAATCGAAAGCAAGCCTTGATTCTTGAAGGCAGTGAAGTACTGGCAAATCATCATGGCATGG
CTCCGGGAATGCTGTTGGAGAAAAATGGCAATACATACATATTACTTCCTGGACCACCCAAGGAACTTGAGCCGATGTTC
CAATTTGAAGCAAAGCCAATACTTGCAGCACTTTTGAATGACGGTGGAGTAATCCAATCCCATGTATTGCGTTTTTATGG
GATTGGGGAAGCCGAGCTCGAAGACCGTGTGCAAGACATTCTAGATAGCCAAACCAATCCAACAGTTGCTCCACTTGCCA
GTGATGGAGAAGTGACACTTCGAATCACGGCAAGGGCACAAAATCCAGAAGAAGCTTGGACACTCATTAAAGAGAAGGAA
GCTGAAATTTTGGCTATTGTCGGCGAGTACCACTACGGCTATAATGATGATTCTTTGGCATCGAAATTGGTGGAAATGCT
CATGCATAACAATTTGACCATTTCAGCAGCAGAAAGCTTAACTGCTGGACTTTTCCAATCTGAGCTTGCCGAAATTCCAG
GAGTGGGTTGCAGCTTAGTAGGTGGTGTTGTCACTTACACGCCAGAAGCGAAAATGAGTCAGTTAGGGATTGAAAAATCG
CTGCTGGATAAATGCGGGATTGTCAGTAGTGAATGTGCCGGTTCTATGGCCGGTAAGGTTCGAGAAAAATTTGGCACAGA
CATCGGCGTAGGCTTGACTGGCGCAGCAGGTCCCGATCCTCACGATGGCCAGGCACCAGGAACAATCTGGCTAGGTTTCA
GCATTGGTGATTCAGAGCATACTCATAAGCTTCAGTTGCAGGGAATGCGCAATACCAACCGTATTCGAACGGTAAAATTT
GCATGCAGCTATTTGATGCGCTTGCTTGTTGAGAAAGGCTATGAAAAGATATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(257-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4P8S641

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

55.474

98.561

0.547
  cinA Streptococcus mitis SK321

46.31

94.245

0.436
  cinA Streptococcus pneumoniae TIGR4

44.472

97.602

0.434
  cinA Streptococcus pneumoniae Rx1

44.472

97.602

0.434
  cinA Streptococcus pneumoniae R6

44.472

97.602

0.434
  cinA Streptococcus mutans UA159

44.665

96.643

0.432
  cinA Streptococcus pneumoniae D39

44.226

97.602

0.432
  cinA Streptococcus mitis NCTC 12261

46.214

91.847

0.424
  cinA Streptococcus suis isolate S10

40.8

89.928

0.367

Multiple sequence alignment