Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C3V42_RS04350 Genome accession   NZ_CP027235
Coordinates   898125..899189 (-) Length   354 a.a.
NCBI ID   WP_009499645.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 893125..904189
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS04325 (C3V42_04325) hcp 893495..895147 (+) 1653 WP_106013801.1 hydroxylamine reductase -
  C3V42_RS04330 (C3V42_04330) hcr 895251..896273 (+) 1023 WP_106013802.1 NADH oxidoreductase -
  C3V42_RS04335 (C3V42_04335) - 896386..897204 (+) 819 WP_106013803.1 Cof-type HAD-IIB family hydrolase -
  C3V42_RS04340 (C3V42_04340) crcB 897204..897590 (+) 387 WP_065265644.1 fluoride efflux transporter CrcB -
  C3V42_RS04345 (C3V42_04345) recX 897587..898045 (-) 459 WP_106013804.1 recombination regulator RecX -
  C3V42_RS04350 (C3V42_04350) recA 898125..899189 (-) 1065 WP_009499645.1 recombinase RecA Machinery gene
  C3V42_RS04355 (C3V42_04355) sxy/tfoX 899561..900214 (+) 654 WP_106013805.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38073.49 Da        Isoelectric Point: 4.8875

>NTDB_id=275945 C3V42_RS04350 WP_009499645.1 898125..899189(-) (recA) [Haemophilus sp. oral taxon 036 strain F0629]
MATQEEKQKALAAALGQIEKQFGKGSIMKLGDTKTLDVESISTGSLGLDVALGIGGLPMGRIVEIFGPESSGKTTLTLSV
IAQAQKAGKTCAFIDAEHALDPIYAAKLGVDVKELFVSQPDNGEQALEICDALVRSGAIDVIIVDSVAALTPKAEIEGDM
GDSHMGLQARLMSQALRKLTGQIKNANCLVVFINQIRMKIGVMFGNPETTTGGNALKFYSSVRLDIRRTGSVKDGENIIG
NETRVKVVKNKLAAPFRQVDFQILYGEGISKAGELLELGVKHKLVEKSGAWYAYNGEKIGQGKTNSMKWLNENPEKADEL
EARLRAELVANPEQALMADIEQSENSSESESDFE

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=275945 C3V42_RS04350 WP_009499645.1 898125..899189(-) (recA) [Haemophilus sp. oral taxon 036 strain F0629]
ATGGCGACTCAAGAAGAAAAACAAAAAGCACTAGCTGCAGCATTAGGACAAATCGAAAAACAATTTGGTAAAGGCTCAAT
TATGAAGTTAGGCGATACCAAAACGTTAGATGTAGAATCTATTTCTACTGGATCACTTGGTTTAGATGTTGCACTAGGAA
TTGGTGGTTTACCTATGGGACGAATTGTAGAAATTTTCGGACCTGAATCATCTGGTAAAACAACATTAACTCTTTCCGTC
ATTGCTCAAGCGCAAAAAGCGGGAAAAACCTGTGCATTTATTGATGCAGAACATGCCCTTGATCCTATTTATGCAGCAAA
ACTTGGGGTGGATGTAAAAGAACTTTTTGTTTCTCAACCTGATAATGGTGAACAAGCACTTGAAATCTGTGATGCATTAG
TTCGCTCTGGCGCAATTGATGTAATCATTGTTGACTCCGTTGCCGCACTGACACCAAAAGCTGAAATTGAAGGGGATATG
GGTGATTCCCATATGGGACTACAGGCTCGTTTAATGTCACAAGCTTTGCGTAAACTTACTGGCCAAATAAAAAATGCAAA
CTGTTTAGTTGTATTTATTAACCAAATCCGAATGAAAATAGGTGTGATGTTTGGCAATCCAGAAACTACCACTGGCGGTA
ATGCATTAAAATTCTATTCTTCTGTTCGTTTAGATATTCGTCGCACAGGTTCTGTAAAAGATGGCGAAAATATTATTGGG
AATGAAACTCGCGTAAAAGTAGTGAAAAACAAATTAGCGGCACCATTCCGTCAAGTAGATTTCCAAATTCTTTATGGTGA
AGGGATTTCAAAAGCGGGTGAGTTATTAGAACTTGGTGTAAAACACAAGCTTGTAGAGAAATCAGGTGCATGGTATGCCT
ATAATGGAGAAAAAATTGGCCAAGGTAAAACTAACTCAATGAAATGGCTCAATGAAAATCCAGAAAAAGCAGATGAGTTA
GAAGCTCGTTTACGCGCAGAATTAGTAGCTAATCCAGAACAAGCTTTAATGGCTGACATTGAACAATCTGAAAATAGTTC
CGAATCAGAAAGTGATTTTGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Glaesserella parasuis strain SC1401

76.301

97.74

0.746
  recA Vibrio cholerae strain A1552

76.9

92.938

0.715
  recA Vibrio cholerae O1 biovar El Tor strain E7946

76.9

92.938

0.715
  recA Pseudomonas stutzeri DSM 10701

75.692

91.808

0.695
  recA Neisseria gonorrhoeae MS11

74.613

91.243

0.681
  recA Neisseria gonorrhoeae MS11

74.613

91.243

0.681
  recA Neisseria gonorrhoeae strain FA1090

74.613

91.243

0.681
  recA Acinetobacter baylyi ADP1

68.195

98.588

0.672
  recA Acinetobacter baumannii D1279779

70.769

91.808

0.65
  recA Ralstonia pseudosolanacearum GMI1000

70.846

90.113

0.638
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.798

94.915

0.596
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.984

89.548

0.582
  recA Helicobacter pylori 26695

60.588

96.045

0.582
  recA Helicobacter pylori strain NCTC11637

60

96.045

0.576
  recA Streptococcus mutans UA159

56.215

100

0.562
  recA Streptococcus pneumoniae R6

56.41

99.153

0.559
  recA Streptococcus pneumoniae Rx1

56.41

99.153

0.559
  recA Streptococcus pneumoniae D39

56.41

99.153

0.559
  recA Streptococcus pneumoniae TIGR4

56.41

99.153

0.559
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.55

92.373

0.559
  recA Bacillus subtilis subsp. subtilis str. 168

63.961

87.006

0.556
  recA Streptococcus mitis NCTC 12261

58.41

92.373

0.54
  recA Streptococcus mitis SK321

58.104

92.373

0.537
  recA Latilactobacillus sakei subsp. sakei 23K

58.204

91.243

0.531
  recA Streptococcus pyogenes NZ131

56.707

92.655

0.525
  recA Lactococcus lactis subsp. cremoris KW2

56.308

91.808

0.517

Multiple sequence alignment