Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   C3V42_RS04355 Genome accession   NZ_CP027235
Coordinates   899561..900214 (+) Length   217 a.a.
NCBI ID   WP_106013805.1    Uniprot ID   -
Organism   Haemophilus sp. oral taxon 036 strain F0629     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 894561..905214
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C3V42_RS04330 (C3V42_04330) hcr 895251..896273 (+) 1023 WP_106013802.1 NADH oxidoreductase -
  C3V42_RS04335 (C3V42_04335) - 896386..897204 (+) 819 WP_106013803.1 Cof-type HAD-IIB family hydrolase -
  C3V42_RS04340 (C3V42_04340) crcB 897204..897590 (+) 387 WP_065265644.1 fluoride efflux transporter CrcB -
  C3V42_RS04345 (C3V42_04345) recX 897587..898045 (-) 459 WP_106013804.1 recombination regulator RecX -
  C3V42_RS04350 (C3V42_04350) recA 898125..899189 (-) 1065 WP_009499645.1 recombinase RecA Machinery gene
  C3V42_RS04355 (C3V42_04355) sxy/tfoX 899561..900214 (+) 654 WP_106013805.1 DNA transformation protein TfoX Regulator

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 24814.22 Da        Isoelectric Point: 10.4287

>NTDB_id=275946 C3V42_RS04355 WP_106013805.1 899561..900214(+) (sxy/tfoX) [Haemophilus sp. oral taxon 036 strain F0629]
MNIKDEHIDVVCSLLDQLVGNVTSRNLFTGYGLFHKGETMFAIWQNKKLYLRGEGELASYLIRLGCEPFTTNEVNKRFVL
SQYYALSNQVIGDNTLCRKLVILSIKQIQKQKLKRILNKLNRLKDLVNLTIRHERALIKAGILDVKMLREIGAENAMVRL
KKAGSGATLDFYWKLVGALLNKNSQMFTKAEKQALLKKLNEVLRANGLKGYRKLDDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=275946 C3V42_RS04355 WP_106013805.1 899561..900214(+) (sxy/tfoX) [Haemophilus sp. oral taxon 036 strain F0629]
ATGAATATAAAAGACGAACATATTGATGTAGTTTGCTCTCTGTTAGATCAGTTGGTAGGAAATGTTACCTCCAGGAACCT
TTTTACAGGATATGGGTTATTCCATAAAGGAGAAACGATGTTTGCAATTTGGCAAAATAAGAAACTCTACTTGAGAGGGG
AGGGAGAGTTAGCATCTTATCTTATTAGGCTTGGTTGTGAGCCTTTTACAACAAATGAAGTAAATAAACGCTTTGTTCTT
TCTCAGTATTATGCTTTATCTAATCAGGTTATAGGTGATAATACATTATGTAGAAAACTAGTAATTCTATCTATTAAACA
AATTCAAAAGCAGAAGTTAAAGCGTATATTAAATAAACTAAACCGTTTGAAAGATTTGGTTAACTTGACTATTAGGCATG
AGAGAGCGCTAATTAAAGCTGGTATTTTAGATGTTAAAATGCTGAGGGAAATTGGCGCAGAGAATGCTATGGTTCGATTA
AAAAAAGCAGGAAGTGGTGCTACTTTAGATTTCTACTGGAAATTAGTTGGAGCATTACTTAATAAAAATAGCCAAATGTT
CACTAAAGCAGAAAAACAAGCTTTATTAAAAAAATTGAATGAAGTTTTGAGGGCTAACGGTTTAAAGGGTTATAGAAAAT
TAGATGATGAGTAA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(121-198)

TfoX N-terminal domain (TfoX_N)

(14-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Haemophilus influenzae Rd KW20

80.645

100

0.806

Multiple sequence alignment