Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C5Z26_RS04245 Genome accession   NZ_CP027194
Coordinates   837483..838610 (-) Length   375 a.a.
NCBI ID   WP_105448750.1    Uniprot ID   A0A2R3JUU4
Organism   Lactobacillus sp. CBA3606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 832483..843610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z26_RS04235 (C5Z26_04235) - 834654..835460 (-) 807 WP_105448748.1 TIGR00282 family metallophosphoesterase -
  C5Z26_RS04240 (C5Z26_04240) rny 835590..837149 (-) 1560 WP_105448749.1 ribonuclease Y -
  C5Z26_RS04245 (C5Z26_04245) recA 837483..838610 (-) 1128 WP_105448750.1 recombinase RecA Machinery gene
  C5Z26_RS04250 (C5Z26_04250) cinA 838702..839964 (-) 1263 WP_105448751.1 competence/damage-inducible protein A Machinery gene
  C5Z26_RS04255 (C5Z26_04255) pgsA 840109..840693 (-) 585 WP_105448752.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C5Z26_RS04260 (C5Z26_04260) - 840716..841609 (-) 894 WP_105448753.1 RodZ domain-containing protein -
  C5Z26_RS04265 (C5Z26_04265) yfmH 841716..843017 (-) 1302 WP_105448754.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 40143.63 Da        Isoelectric Point: 6.0946

>NTDB_id=275679 C5Z26_RS04245 WP_105448750.1 837483..838610(-) (recA) [Lactobacillus sp. CBA3606]
MADARQAALDAALKKIEKNFGKGAIMRMGDAANTAISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQIKDGTDIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIVDMAADKDIVKKSGSWYSYGEDRIGQGRENAKKYLVEHPDVMTEIRQ
KVRNAYGMDASADEETEAVDGKRTEPKAANDKAAGKAPDKKAAIKLDLDDTKKDK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=275679 C5Z26_RS04245 WP_105448750.1 837483..838610(-) (recA) [Lactobacillus sp. CBA3606]
TTGGCTGATGCACGGCAAGCGGCACTAGATGCTGCCTTAAAAAAAATTGAAAAGAACTTCGGGAAAGGCGCTATTATGCG
AATGGGGGATGCTGCTAATACAGCAATCTCGACCATTTCTAGTGGGTCGCTAGCCCTCGATGATGCTTTAGGTGTTGGTG
GGTATCCCCGCGGCCGCATCGTTGAAATCTATGGTCCTGAAAGTTCTGGTAAGACGACCGTTGCGTTGCACGCAGTTGCA
GAAGTGCAAAAGCAAGGCGGGACGGCTGCATATATCGATGCTGAAAATGCGTTAGATCCCGTTTATGCGGAACATCTAGG
CGTTAACATTGATGACTTATTGCTTTCACAACCAGATACTGGTGAACAAGGGCTCGAAATTGCGGATGCCTTGGTTTCTA
GTGGGGCAGTTGACATTTTAGTTGTCGATTCAGTGGCGGCCTTGGTGCCACGTGCTGAAATTGAAGGCGAAATGGGTGAC
GCACACGTTGGGTTACAAGCCCGTTTAATGTCACAAGCGTTACGGAAATTATCTGGGACGTTGAATAAGACTAAGACCAT
TGCCTTATTTATTAATCAAATTCGTGAAAAAGTTGGGGTTATGTTTGGTAATCCTGAAGTTACCCCAGGTGGTCGGGCTT
TGAAGTTCTACGCAACCGTTCGGTTGGAAGTACGGCGTGCCGAACAAATCAAAGACGGAACCGATATTATTGGGAACCGT
GTTCGAATCAAGGTTGTCAAGAACAAGGTTGCGCCACCATTCAAACGAGCTGAAGTTGATATCATGTACGGTCACGGGAT
TTCACAAACAGGTGAAATCGTGGATATGGCTGCTGATAAAGACATCGTTAAGAAGAGTGGCTCTTGGTATTCTTATGGTG
AAGACCGGATTGGTCAAGGCCGTGAAAATGCGAAGAAATACTTGGTTGAACATCCAGATGTCATGACCGAAATTCGTCAG
AAAGTTCGGAATGCTTATGGGATGGATGCTTCTGCTGATGAAGAGACTGAAGCTGTGGACGGTAAGCGGACTGAACCAAA
GGCAGCTAACGATAAAGCTGCGGGTAAAGCACCGGACAAAAAAGCGGCCATTAAGCTTGATTTAGATGACACTAAAAAAG
ATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3JUU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.186

88.8

0.765
  recA Bacillus subtilis subsp. subtilis str. 168

75.684

87.733

0.664
  recA Streptococcus mutans UA159

63.926

100

0.643
  recA Streptococcus pneumoniae R6

66.859

92.533

0.619
  recA Streptococcus pneumoniae TIGR4

66.859

92.533

0.619
  recA Streptococcus pneumoniae Rx1

66.859

92.533

0.619
  recA Streptococcus pneumoniae D39

66.859

92.533

0.619
  recA Streptococcus pyogenes NZ131

69.486

88.267

0.613
  recA Streptococcus mitis SK321

69.207

87.467

0.605
  recA Streptococcus mitis NCTC 12261

68.902

87.467

0.603
  recA Lactococcus lactis subsp. cremoris KW2

68.598

87.467

0.6
  recA Neisseria gonorrhoeae MS11

60.519

92.533

0.56
  recA Neisseria gonorrhoeae strain FA1090

60.519

92.533

0.56
  recA Neisseria gonorrhoeae MS11

60.519

92.533

0.56
  recA Acinetobacter baylyi ADP1

59.538

92.267

0.549
  recA Pseudomonas stutzeri DSM 10701

62.539

86.133

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

86.667

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

86.133

0.536
  recA Vibrio cholerae strain A1552

62.229

86.133

0.536
  recA Ralstonia pseudosolanacearum GMI1000

64.217

83.467

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.48

91.2

0.533
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.55

87.2

0.528
  recA Acinetobacter baumannii D1279779

60.372

86.133

0.52
  recA Glaesserella parasuis strain SC1401

59.091

88

0.52
  recA Helicobacter pylori 26695

58.951

86.4

0.509
  recA Helicobacter pylori strain NCTC11637

58.951

86.4

0.509

Multiple sequence alignment