Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C5Z26_RS04250 Genome accession   NZ_CP027194
Coordinates   838702..839964 (-) Length   420 a.a.
NCBI ID   WP_105448751.1    Uniprot ID   A0A2R3JUX9
Organism   Lactobacillus sp. CBA3606     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 833702..844964
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z26_RS04235 (C5Z26_04235) - 834654..835460 (-) 807 WP_105448748.1 TIGR00282 family metallophosphoesterase -
  C5Z26_RS04240 (C5Z26_04240) rny 835590..837149 (-) 1560 WP_105448749.1 ribonuclease Y -
  C5Z26_RS04245 (C5Z26_04245) recA 837483..838610 (-) 1128 WP_105448750.1 recombinase RecA Machinery gene
  C5Z26_RS04250 (C5Z26_04250) cinA 838702..839964 (-) 1263 WP_105448751.1 competence/damage-inducible protein A Machinery gene
  C5Z26_RS04255 (C5Z26_04255) pgsA 840109..840693 (-) 585 WP_105448752.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C5Z26_RS04260 (C5Z26_04260) - 840716..841609 (-) 894 WP_105448753.1 RodZ domain-containing protein -
  C5Z26_RS04265 (C5Z26_04265) yfmH 841716..843017 (-) 1302 WP_105448754.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  C5Z26_RS04270 (C5Z26_04270) yfmF 843008..844279 (-) 1272 WP_234005727.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 44648.80 Da        Isoelectric Point: 5.0589

>NTDB_id=275680 C5Z26_RS04250 WP_105448751.1 838702..839964(-) (cinA) [Lactobacillus sp. CBA3606]
MQAEIIAVGTEILLGQITNTNSTHIAQGLAELGIDSYYQTVVGDNPARLTAVIAIAAKRNDLVILAGGLGPTKDDLTKQT
LAAYLGVPLVEDAPAMQVIEQRFAQTGKVMTANNRLQALYPKGAQPLTNHNGLAVGAFYQNPDTADFVLLPGPPREMTKM
FDTEAKPRLQQAYGQQAQIYSRVLRFFGIGESQLVTELQDLIATQQAVTIAPYAKTNEVTLRLSAQSATQADATAALDTV
EAQIKAQVGDYFYGYGDDNSLAQVVIETMIARQLQLTAVESLTAGLFQSTIGGIPGVSAIFPGGLVTYANTAKHQLAGVP
QATIDQAGVVSEATAMAMAVGGRAQLKTDIALSFTGVAGPDELEGQPAGTVWIGLAYRDQPTIAKQYHFAGDRQKIRERS
VMAGLDLLRRTLAADQGTKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=275680 C5Z26_RS04250 WP_105448751.1 838702..839964(-) (cinA) [Lactobacillus sp. CBA3606]
ATGCAAGCAGAAATTATTGCGGTCGGTACTGAGATTTTACTCGGCCAGATTACGAATACCAATAGTACTCATATTGCACA
GGGACTAGCTGAATTAGGCATTGATAGCTATTATCAAACGGTAGTAGGCGATAATCCCGCCCGCTTAACAGCCGTGATTG
CGATTGCGGCGAAACGTAATGATCTTGTGATTTTAGCGGGGGGACTAGGGCCGACCAAGGATGATTTGACGAAACAAACT
TTAGCAGCTTATCTAGGCGTCCCATTAGTTGAAGATGCGCCAGCGATGCAAGTGATTGAGCAACGGTTTGCCCAAACAGG
TAAAGTGATGACTGCAAATAATCGGTTACAAGCACTTTATCCAAAAGGTGCACAACCGCTGACTAATCATAATGGGCTAG
CCGTCGGGGCCTTTTATCAAAATCCGGATACAGCGGACTTTGTCTTATTGCCAGGTCCGCCACGGGAAATGACAAAGATG
TTTGATACGGAAGCTAAACCTAGACTGCAGCAAGCGTATGGGCAACAAGCACAAATCTATTCGCGTGTTTTACGCTTTTT
CGGGATTGGTGAGTCACAATTGGTGACGGAATTACAGGACTTGATTGCGACGCAACAAGCCGTTACGATTGCGCCTTATG
CCAAAACAAATGAGGTGACGTTGCGATTGAGTGCGCAATCCGCGACCCAAGCTGATGCGACTGCGGCCTTAGATACAGTG
GAAGCCCAAATTAAGGCCCAGGTTGGCGATTACTTTTATGGTTACGGTGATGACAATTCATTGGCCCAAGTTGTTATTGA
GACAATGATTGCGCGGCAGTTGCAGCTGACGGCGGTTGAAAGTCTGACCGCAGGATTATTTCAGAGTACCATTGGGGGGA
TTCCCGGAGTTTCAGCTATCTTTCCCGGTGGCCTCGTCACGTATGCCAACACGGCTAAGCACCAATTAGCTGGGGTGCCA
CAAGCGACGATTGATCAAGCTGGCGTGGTCTCTGAAGCAACGGCGATGGCGATGGCAGTAGGTGGCCGGGCCCAATTGAA
GACGGATATCGCCTTGAGCTTTACGGGCGTTGCCGGTCCAGATGAGCTTGAAGGTCAACCAGCTGGCACAGTTTGGATTG
GTCTAGCTTATCGTGACCAACCAACGATTGCCAAGCAATATCACTTTGCGGGGGATCGCCAAAAGATTCGTGAGCGTAGT
GTGATGGCTGGACTTGATTTATTACGGCGGACATTGGCTGCTGATCAAGGGACCAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3JUX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

49.524

100

0.495
  cinA Streptococcus mitis SK321

48.7

100

0.49
  cinA Streptococcus pneumoniae TIGR4

48.585

100

0.49
  cinA Streptococcus mitis NCTC 12261

48.585

100

0.49
  cinA Streptococcus pneumoniae Rx1

48.585

100

0.49
  cinA Streptococcus pneumoniae R6

48.585

100

0.49
  cinA Streptococcus pneumoniae D39

48.349

100

0.488
  cinA Bacillus subtilis subsp. subtilis str. 168

46.229

97.857

0.452
  cinA Streptococcus suis isolate S10

41.346

99.048

0.41

Multiple sequence alignment