Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C5Z25_RS02870 Genome accession   NZ_CP027190
Coordinates   567742..568869 (-) Length   375 a.a.
NCBI ID   WP_105451245.1    Uniprot ID   A0A2R3JNF4
Organism   Lactobacillus sp. CBA3605     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 562742..573869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z25_RS02860 (C5Z25_02860) - 564889..565695 (-) 807 WP_105451244.1 TIGR00282 family metallophosphoesterase -
  C5Z25_RS02865 (C5Z25_02865) rny 565825..567384 (-) 1560 WP_105448749.1 ribonuclease Y -
  C5Z25_RS02870 (C5Z25_02870) recA 567742..568869 (-) 1128 WP_105451245.1 recombinase RecA Machinery gene
  C5Z25_RS02875 (C5Z25_02875) cinA 568961..570223 (-) 1263 WP_105451246.1 competence/damage-inducible protein A Machinery gene
  C5Z25_RS02880 (C5Z25_02880) pgsA 570367..570951 (-) 585 WP_105448752.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C5Z25_RS02885 (C5Z25_02885) - 570974..571867 (-) 894 WP_105451247.1 RodZ domain-containing protein -
  C5Z25_RS02890 (C5Z25_02890) yfmH 571974..573275 (-) 1302 WP_105451248.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 375 a.a.        Molecular weight: 40129.60 Da        Isoelectric Point: 6.0935

>NTDB_id=275647 C5Z25_RS02870 WP_105451245.1 567742..568869(-) (recA) [Lactobacillus sp. CBA3605]
MADARQAALDAALKKIEKNFGKGAIMRMGDAANTAISTISSGSLALDDALGVGGYPRGRIVEIYGPESSGKTTVALHAVA
EVQKQGGTAAYIDAENALDPVYAEHLGVNIDDLLLSQPDTGEQGLEIADALVSSGAVDILVVDSVAALVPRAEIEGEMGD
AHVGLQARLMSQALRKLSGTLNKTKTIALFINQIREKVGVMFGNPEVTPGGRALKFYATVRLEVRRAEQIKDGTDIIGNR
VRIKVVKNKVAPPFKRAEVDIMYGHGISQTGEIVDMAADKDIVKKSGSWYSYGEDRIGQGRENAKKYLVEHPDVMTEIRQ
KVRNAYGMDASADEETEAVDGKRTDPKAANDKAAGKAPDKKAAIKLDLDDTKKDK

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=275647 C5Z25_RS02870 WP_105451245.1 567742..568869(-) (recA) [Lactobacillus sp. CBA3605]
TTGGCTGATGCACGGCAAGCGGCACTAGATGCTGCCTTAAAAAAAATTGAAAAGAACTTCGGTAAAGGCGCCATTATGCG
AATGGGGGATGCTGCTAATACAGCAATCTCGACCATTTCTAGTGGGTCCCTAGCCCTCGATGATGCTTTAGGTGTTGGTG
GGTATCCCCGCGGCCGCATCGTTGAAATCTATGGTCCTGAAAGTTCTGGTAAGACGACCGTTGCGTTGCACGCAGTTGCA
GAAGTGCAAAAGCAAGGCGGGACGGCTGCGTATATTGATGCTGAAAATGCGTTAGATCCCGTTTATGCGGAACATTTAGG
CGTTAACATTGATGACTTATTGCTTTCACAACCAGATACTGGTGAACAAGGGCTCGAAATTGCGGACGCCTTAGTTTCTA
GTGGGGCAGTTGACATTTTAGTCGTCGATTCAGTTGCAGCCTTGGTGCCACGTGCTGAAATTGAAGGCGAAATGGGTGAT
GCGCACGTTGGGTTGCAAGCTCGTTTAATGTCACAAGCGTTACGGAAATTATCTGGGACGTTGAATAAGACTAAAACCAT
TGCCTTATTTATTAATCAAATTCGTGAAAAAGTTGGGGTTATGTTCGGTAATCCTGAAGTTACCCCAGGTGGTCGGGCTT
TGAAGTTCTATGCAACCGTTCGTTTGGAAGTTCGGCGTGCGGAACAGATTAAAGACGGGACCGATATTATTGGGAACCGA
GTTCGGATCAAAGTTGTCAAGAACAAGGTTGCGCCACCATTCAAACGTGCTGAAGTCGATATTATGTACGGTCATGGGAT
TTCACAAACGGGTGAAATCGTGGATATGGCTGCTGATAAAGACATCGTTAAGAAGAGTGGCTCTTGGTATTCTTATGGTG
AAGACCGTATTGGTCAAGGCCGTGAAAATGCGAAGAAATACTTGGTTGAACATCCAGATGTCATGACCGAAATTCGTCAG
AAAGTTCGGAATGCTTATGGGATGGATGCTTCTGCCGATGAAGAGACTGAAGCCGTGGATGGTAAGCGGACTGACCCGAA
GGCAGCTAATGATAAAGCTGCGGGTAAAGCACCGGACAAAAAAGCGGCCATTAAGCTCGATTTAGATGACACTAAAAAAG
ATAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2R3JNF4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

86.186

88.8

0.765
  recA Bacillus subtilis subsp. subtilis str. 168

75.684

87.733

0.664
  recA Streptococcus mutans UA159

64.191

100

0.645
  recA Streptococcus pneumoniae R6

66.571

92.533

0.616
  recA Streptococcus pneumoniae TIGR4

66.571

92.533

0.616
  recA Streptococcus pneumoniae Rx1

66.571

92.533

0.616
  recA Streptococcus pneumoniae D39

66.571

92.533

0.616
  recA Streptococcus pyogenes NZ131

69.486

88.267

0.613
  recA Streptococcus mitis SK321

69.207

87.467

0.605
  recA Streptococcus mitis NCTC 12261

68.902

87.467

0.603
  recA Lactococcus lactis subsp. cremoris KW2

68.598

87.467

0.6
  recA Neisseria gonorrhoeae MS11

60.231

92.533

0.557
  recA Neisseria gonorrhoeae strain FA1090

60.231

92.533

0.557
  recA Neisseria gonorrhoeae MS11

60.231

92.533

0.557
  recA Acinetobacter baylyi ADP1

59.249

92.267

0.547
  recA Pseudomonas stutzeri DSM 10701

62.539

86.133

0.539
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

86.667

0.539
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.229

86.133

0.536
  recA Vibrio cholerae strain A1552

62.229

86.133

0.536
  recA Ralstonia pseudosolanacearum GMI1000

64.217

83.467

0.536
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

58.48

91.2

0.533
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.55

87.2

0.528
  recA Acinetobacter baumannii D1279779

60.372

86.133

0.52
  recA Glaesserella parasuis strain SC1401

59.091

88

0.52
  recA Helicobacter pylori 26695

58.951

86.4

0.509
  recA Helicobacter pylori strain NCTC11637

58.951

86.4

0.509

Multiple sequence alignment