Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C5Z25_RS02875 Genome accession   NZ_CP027190
Coordinates   568961..570223 (-) Length   420 a.a.
NCBI ID   WP_105451246.1    Uniprot ID   -
Organism   Lactobacillus sp. CBA3605     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 563961..575223
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Z25_RS02860 (C5Z25_02860) - 564889..565695 (-) 807 WP_105451244.1 TIGR00282 family metallophosphoesterase -
  C5Z25_RS02865 (C5Z25_02865) rny 565825..567384 (-) 1560 WP_105448749.1 ribonuclease Y -
  C5Z25_RS02870 (C5Z25_02870) recA 567742..568869 (-) 1128 WP_105451245.1 recombinase RecA Machinery gene
  C5Z25_RS02875 (C5Z25_02875) cinA 568961..570223 (-) 1263 WP_105451246.1 competence/damage-inducible protein A Machinery gene
  C5Z25_RS02880 (C5Z25_02880) pgsA 570367..570951 (-) 585 WP_105448752.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C5Z25_RS02885 (C5Z25_02885) - 570974..571867 (-) 894 WP_105451247.1 RodZ domain-containing protein -
  C5Z25_RS02890 (C5Z25_02890) yfmH 571974..573275 (-) 1302 WP_105451248.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  C5Z25_RS02895 (C5Z25_02895) yfmF 573266..574537 (-) 1272 WP_234002775.1 EF-P 5-aminopentanol modification-associated protein YfmF -

Sequence

Protein


Download         Length: 420 a.a.        Molecular weight: 44622.67 Da        Isoelectric Point: 4.9306

>NTDB_id=275648 C5Z25_RS02875 WP_105451246.1 568961..570223(-) (cinA) [Lactobacillus sp. CBA3605]
MQAEIIAVGTEILLGQITNTNSTHIAQGLAELGIDSYYQTVVGDNPARLTAAIAIAAKRNDLVILAGGLGPTKDDLTKQT
LAAYLGVPLVEDDPAMQVIEQRFAQTGKVMTTNNRLQALYPQGAQPLTNHNGLAVGAFYQNPDTADFVLLPGPPREMKKM
FDTEAKPRLQQAYGQQAQIYSRVLRFFGIGESQLVTELQDLIATQQAVTIAPYAKTNEVTLRLSAQAATQADATAALDAV
EAQIKTQVGDYFYGYGDDNSLAQVVIETMIARQLSLTAVESLTAGLFQSTIGSIPGVSAIFPGGLVTYANTAKHQLAGVP
QATIDQAGVVSEATAMAMAVGGRAQLNTAVALSFTGVAGPDELEGQPAGTVWIGLAYRDQPTIAKQYHFAGDRQKIRERS
VMAGLDLLRRTLAADQGTKK

Nucleotide


Download         Length: 1263 bp        

>NTDB_id=275648 C5Z25_RS02875 WP_105451246.1 568961..570223(-) (cinA) [Lactobacillus sp. CBA3605]
ATGCAAGCAGAAATTATTGCGGTCGGTACTGAAATTTTACTCGGCCAGATTACGAATACCAATAGTACCCATATTGCACA
GGGATTAGCTGAATTAGGCATTGACAGCTATTATCAAACGGTAGTGGGTGACAATCCCGCCCGCCTAACAGCTGCGATTG
CCATTGCGGCGAAACGCAACGATCTTGTTATCTTAGCGGGGGGATTAGGGCCTACTAAGGATGATTTAACGAAGCAAACA
TTGGCGGCCTATCTAGGCGTTCCATTAGTTGAAGATGACCCAGCGATGCAAGTTATTGAACAGCGGTTTGCCCAAACGGG
TAAAGTGATGACGACAAATAACCGGTTGCAAGCACTTTATCCCCAAGGCGCACAACCGCTGACTAATCATAATGGGTTAG
CCGTAGGGGCCTTTTATCAAAATCCGGATACCGCGGACTTTGTCTTATTACCAGGACCACCACGAGAAATGAAGAAGATG
TTTGATACGGAAGCTAAGCCTAGACTCCAGCAAGCGTATGGACAGCAAGCCCAAATCTATTCCCGAGTGTTACGCTTTTT
CGGCATTGGTGAATCGCAATTAGTGACGGAATTACAGGATTTGATTGCGACCCAACAAGCGGTCACAATTGCACCTTATG
CAAAAACCAATGAGGTCACGCTCCGTTTGAGTGCGCAAGCTGCGACTCAAGCGGATGCAACCGCTGCTTTAGATGCGGTG
GAAGCCCAAATTAAGACCCAGGTTGGCGACTACTTTTATGGGTACGGTGATGACAACTCGTTGGCACAAGTCGTTATTGA
GACGATGATTGCGCGGCAGCTGAGTCTGACGGCAGTTGAAAGTCTGACGGCGGGATTGTTCCAGAGTACTATTGGCAGTA
TTCCAGGGGTTTCAGCCATCTTTCCCGGTGGCCTGGTGACATATGCCAATACTGCTAAGCATCAATTAGCAGGGGTGCCA
CAGGCAACGATTGATCAAGCTGGGGTGGTATCAGAAGCAACAGCGATGGCAATGGCGGTTGGTGGCCGGGCCCAACTGAA
TACGGCTGTCGCCTTAAGTTTTACGGGCGTTGCTGGTCCTGATGAGCTTGAAGGTCAGCCAGCTGGCACGGTTTGGATTG
GCCTAGCTTACCGTGATCAACCAACGATTGCCAAGCAATATCATTTTGCGGGGGATCGCCAAAAGATTCGCGAGCGTAGT
GTGATGGCCGGACTTGATTTATTACGGCGGACATTAGCAGCTGATCAAGGGACTAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(181-254)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(259-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis NCTC 12261

48.821

100

0.493
  cinA Streptococcus pneumoniae TIGR4

48.821

100

0.493
  cinA Streptococcus pneumoniae Rx1

48.821

100

0.493
  cinA Streptococcus pneumoniae R6

48.821

100

0.493
  cinA Streptococcus mitis SK321

48.936

100

0.493
  cinA Streptococcus mutans UA159

49.403

99.762

0.493
  cinA Streptococcus pneumoniae D39

48.585

100

0.49
  cinA Bacillus subtilis subsp. subtilis str. 168

45.742

97.857

0.448
  cinA Streptococcus suis isolate S10

41.587

99.048

0.412

Multiple sequence alignment