Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C5695_RS08575 Genome accession   NZ_CP027116
Coordinates   1691788..1692825 (+) Length   345 a.a.
NCBI ID   WP_117730357.1    Uniprot ID   -
Organism   Bacillus pumilus strain 145     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1686788..1697825
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS08550 (C5695_08555) - 1687582..1687839 (+) 258 WP_048239821.1 DUF3243 domain-containing protein -
  C5695_RS08555 (C5695_08560) - 1687971..1688762 (+) 792 WP_117730353.1 DUF3388 domain-containing protein -
  C5695_RS08560 (C5695_08565) - 1688786..1689685 (+) 900 WP_117730354.1 helix-turn-helix domain-containing protein -
  C5695_RS08565 (C5695_08570) pgsA 1689762..1690343 (+) 582 WP_117730355.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C5695_RS08570 (C5695_08575) cinA 1690360..1691610 (+) 1251 WP_117730356.1 competence/damage-inducible protein A Machinery gene
  C5695_RS08575 (C5695_08580) recA 1691788..1692825 (+) 1038 WP_117730357.1 recombinase RecA Machinery gene
  C5695_RS08585 (C5695_08590) rny 1693293..1694855 (+) 1563 WP_003211958.1 ribonuclease Y -
  C5695_RS08590 (C5695_08595) - 1694945..1695739 (+) 795 WP_117730358.1 TIGR00282 family metallophosphoesterase -
  C5695_RS08595 (C5695_08600) spoVS 1695941..1696201 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37635.83 Da        Isoelectric Point: 4.7773

>NTDB_id=275054 C5695_RS08575 WP_117730357.1 1691788..1692825(+) (recA) [Bacillus pumilus strain 145]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDTNGVKAEEEEGQEELEI

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=275054 C5695_RS08575 WP_117730357.1 1691788..1692825(+) (recA) [Bacillus pumilus strain 145]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCTAGTGGTTCGTTAGCACTTGATACTGCGCTTGGAATAGGTGGAT
ATCCTCGCGGCCGTATTATTGAGGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCCATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATCGATGCGGAGCATGCGCTAGATCCAGTTTACGCTCAAAAACTAGGTGT
CAATATTGATGAGCTATTACTTTCTCAGCCGGATACAGGGGAACAAGCACTTGAAATTGCAGAAGCTCTTGTACGCAGTG
GGGCTGTTGACATTGTTGTTATTGACTCAGTAGCTGCACTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTTCAAGCTCGTTTAATGTCCCAAGCACTTCGTAAACTATCAGGTGCCATTAATAAATCAAAAACCATTGC
TATCTTTATTAACCAAATTCGTGAAAAAGTTGGTGTCATGTTCGGTAACCCTGAAACAACACCAGGTGGACGTGCACTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTACGCCGTGCGGAACAGTTGAAACAAGGTAACGACATCATGGGGAACAAAACG
AGAATTAAAGTGGTGAAAAACAAAGTAGCACCGCCATTCCGTATTGCCGAAGTAGACATTATGTATGGTGAAGGTATTTC
GAAAGAGGGAGAAATCATCGACCTTGGAAGTGAACTAGATATCGTACAAAAGAGCGGAGCTTGGTATTCTTATCAAGAGG
AACGTCTTGGACAAGGCCGTGAAAATGCGAAACAGTTCCTTAAAGAAAATAAAGATATCATGCTGATGATTCAGGAGCAG
ATTAGAGAGCATTACGGTTTGGATACAAACGGAGTGAAAGCTGAAGAAGAAGAAGGACAAGAGGAATTGGAAATTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

96.988

96.232

0.933
  recA Latilactobacillus sakei subsp. sakei 23K

75.077

94.203

0.707
  recA Streptococcus pneumoniae Rx1

69.091

95.652

0.661
  recA Streptococcus pneumoniae D39

69.091

95.652

0.661
  recA Streptococcus mitis NCTC 12261

69.091

95.652

0.661
  recA Streptococcus pneumoniae R6

69.091

95.652

0.661
  recA Streptococcus pneumoniae TIGR4

69.091

95.652

0.661
  recA Streptococcus mitis SK321

68.788

95.652

0.658
  recA Streptococcus mutans UA159

68.693

95.362

0.655
  recA Streptococcus pyogenes NZ131

67.988

95.072

0.646
  recA Lactococcus lactis subsp. cremoris KW2

66.364

95.652

0.635
  recA Neisseria gonorrhoeae strain FA1090

63.501

97.681

0.62
  recA Neisseria gonorrhoeae MS11

63.501

97.681

0.62
  recA Neisseria gonorrhoeae MS11

63.501

97.681

0.62
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

98.551

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.329

95.072

0.612
  recA Acinetobacter baumannii D1279779

62.13

97.971

0.609
  recA Helicobacter pylori strain NCTC11637

64.615

94.203

0.609
  recA Helicobacter pylori 26695

64.615

94.203

0.609
  recA Glaesserella parasuis strain SC1401

60.933

99.42

0.606
  recA Acinetobacter baylyi ADP1

60.35

99.42

0.6
  recA Vibrio cholerae strain A1552

64.174

93.043

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.043

0.597
  recA Pseudomonas stutzeri DSM 10701

61.446

96.232

0.591
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.783

0.591
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.754

0.559

Multiple sequence alignment