Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C5695_RS08570 Genome accession   NZ_CP027116
Coordinates   1690360..1691610 (+) Length   416 a.a.
NCBI ID   WP_117730356.1    Uniprot ID   A0AAD0HMA6
Organism   Bacillus pumilus strain 145     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1685360..1696610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5695_RS08545 (C5695_08550) - 1686780..1687508 (+) 729 WP_117730352.1 SDR family oxidoreductase -
  C5695_RS08550 (C5695_08555) - 1687582..1687839 (+) 258 WP_048239821.1 DUF3243 domain-containing protein -
  C5695_RS08555 (C5695_08560) - 1687971..1688762 (+) 792 WP_117730353.1 DUF3388 domain-containing protein -
  C5695_RS08560 (C5695_08565) - 1688786..1689685 (+) 900 WP_117730354.1 helix-turn-helix domain-containing protein -
  C5695_RS08565 (C5695_08570) pgsA 1689762..1690343 (+) 582 WP_117730355.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C5695_RS08570 (C5695_08575) cinA 1690360..1691610 (+) 1251 WP_117730356.1 competence/damage-inducible protein A Machinery gene
  C5695_RS08575 (C5695_08580) recA 1691788..1692825 (+) 1038 WP_117730357.1 recombinase RecA Machinery gene
  C5695_RS08585 (C5695_08590) rny 1693293..1694855 (+) 1563 WP_003211958.1 ribonuclease Y -
  C5695_RS08590 (C5695_08595) - 1694945..1695739 (+) 795 WP_117730358.1 TIGR00282 family metallophosphoesterase -
  C5695_RS08595 (C5695_08600) spoVS 1695941..1696201 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45543.65 Da        Isoelectric Point: 4.9805

>NTDB_id=275053 C5695_RS08570 WP_117730356.1 1690360..1691610(+) (cinA) [Bacillus pumilus strain 145]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKKAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQDYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQEEDTFYVLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETDRLL
KETEAKILARVGEYFYGYGDTSLVREASKALHAHGKTVAAAESLTGGMFSEWLTDLEGASSILNGSVVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDQTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=275053 C5695_RS08570 WP_117730356.1 1690360..1691610(+) (cinA) [Bacillus pumilus strain 145]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGATCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCACACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAAGGCCATTCAAGTGGCGCAGGAAAGATCTAATTTCATTATCTTCTCTGGTGGTCTCGGACCAACCAAAGATGATTTA
ACAAAAGAAACCATTGCGAGCACGCTTGGAAAAGAGCTCGTATTAAATGAAGAAGCGTTTGAATCCATTCAAGACTACTT
TCGAAAGACTGGACGGGACATGTCACCAAATAACCGTAAGCAGGCACTCGTTCTAGAAGGATCCGATGTGCTCGTGAACC
GGTTCGGGATGGCCCCAGGAATGTTTATTCAAGAAGAAGATACATTTTATGTGCTTCTTCCTGGGCCGCCAAGTGAACTG
CATCCAATGTTTGAGAACGAGGCGAAGCCGCTGATTTCTGAGAAACTCGGTTTAAAGGAAAAAATCGTATCTGTTGTTCT
CCGTTTCTTCGGAATCGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAATCCTACGATTG
CTCCTCTCGCATCTGACGGTGAAGTGACGCTAAGACTCACAGCGAAGCATGAGGATGAAAAAGAAACAGATCGTCTATTA
AAAGAAACAGAAGCGAAAATTTTAGCGCGGGTAGGTGAGTATTTCTACGGATATGGGGATACATCACTTGTTCGTGAAGC
TTCCAAAGCATTGCATGCGCACGGGAAAACTGTTGCAGCGGCTGAGAGTTTGACTGGTGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGCGCATCATCCATTTTAAACGGTAGTGTCGTTTGTTATACAAACCAAGTTAAACAGCAGGTGCTTGGC
TGCCGGGAAGAAACATTGTCTTCCCATGGTGCTGTCAGTAAAGAGTGTGCTTTAGAGCTTGCTGAAGGGGTTAGAAAGCT
GACCGGAAGTGATATTGGCATTAGTTTTACGGGTGTAGCAGGTCCTGATACCCATGAGGGTCAACCTGTCGGGAAAGTGT
TTATTGGTCTATCCACAAAAGACCAGACGGACGTGTTTGAATGGATGTTTACAGGGAGCCGGTCAGGCATTCGAAAGCGT
GCTGTGAAATATGGTTTGCATCACTTGCTTAACTTATTAAAAGAGAGTTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

74.458

99.76

0.743
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

42.857

90.865

0.389

Multiple sequence alignment