Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C5Y82_RS08135 Genome accession   NZ_CP027034
Coordinates   1632231..1633268 (+) Length   345 a.a.
NCBI ID   WP_119124862.1    Uniprot ID   -
Organism   Bacillus pumilus strain 150a     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1627231..1638268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS08110 (C5Y82_08110) - 1628015..1628272 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  C5Y82_RS08115 (C5Y82_08115) - 1628404..1629195 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  C5Y82_RS08120 (C5Y82_08120) - 1629219..1630130 (+) 912 WP_088001384.1 helix-turn-helix domain-containing protein -
  C5Y82_RS08125 (C5Y82_08125) pgsA 1630206..1630787 (+) 582 WP_012010018.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C5Y82_RS08130 (C5Y82_08130) cinA 1630804..1632054 (+) 1251 WP_012010019.1 competence/damage-inducible protein A Machinery gene
  C5Y82_RS08135 (C5Y82_08135) recA 1632231..1633268 (+) 1038 WP_119124862.1 recombinase RecA Machinery gene
  C5Y82_RS08140 (C5Y82_08140) - 1633413..1634588 (+) 1176 WP_119124863.1 serine hydrolase domain-containing protein -
  C5Y82_RS08145 (C5Y82_08145) rny 1634822..1636384 (+) 1563 WP_003211958.1 ribonuclease Y -
  C5Y82_RS08150 (C5Y82_08150) - 1636473..1637267 (+) 795 WP_012010021.1 TIGR00282 family metallophosphoesterase -
  C5Y82_RS08155 (C5Y82_08155) spoVS 1637469..1637729 (+) 261 WP_003211281.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37574.79 Da        Isoelectric Point: 4.8218

>NTDB_id=274647 C5Y82_RS08135 WP_119124862.1 1632231..1633268(+) (recA) [Bacillus pumilus strain 150a]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDIVVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDIMGNKT
RIKVVKNKVAPPFRIAEVDIMYGEGISKEGEIIDLGSELDIVQKSGAWYSYQEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVAQQEAEEALEVLE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=274647 C5Y82_RS08135 WP_119124862.1 1632231..1633268(+) (recA) [Bacillus pumilus strain 150a]
ATGAGTGATCGTCAAGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTTGGTAAAGGCTCTATTATGAAACT
AGGAGAGCAAACAGATACACGTATTTCAACAGTACCGAGTGGTTCGTTAGCACTTGATACTGCACTGGGAATAGGCGGAT
ATCCTCGCGGGCGTATTATTGAAGTATATGGTCCAGAGAGTTCTGGTAAAACGACAGTAGCACTTCATGCCATTGCTGAG
GTTCAGCAGCAGGGAGGACAAGCTGCATTTATCGATGCAGAGCATGCACTTGATCCAGTTTATGCTCAAAAACTAGGTGT
CAATATTGATGAGCTGTTACTTTCTCAGCCTGACACAGGAGAGCAAGCACTTGAAATTGCAGAAGCGCTTGTCCGCAGTG
GTGCAGTTGATATTGTTGTTATTGACTCAGTAGCTGCTCTTGTACCAAAAGCAGAGATTGAAGGAGACATGGGTGATTCA
CACGTTGGTCTACAAGCACGTTTGATGTCCCAAGCACTTCGTAAACTATCTGGTGCCATTAATAAATCAAAAACCATTGC
CATCTTTATTAACCAAATTCGTGAAAAAGTTGGGGTCATGTTCGGTAACCCTGAAACAACGCCTGGTGGACGTGCGCTGA
AGTTCTATTCATCTGTTCGTTTAGAAGTGCGCCGTGCTGAACAGCTGAAACAGGGAAATGACATTATGGGGAATAAAACG
AGAATTAAAGTGGTGAAAAACAAAGTAGCACCGCCTTTCCGTATTGCAGAAGTAGATATTATGTACGGTGAAGGAATCTC
AAAAGAGGGCGAAATCATTGACCTTGGAAGCGAACTAGATATCGTACAAAAGAGCGGTGCTTGGTATTCTTACCAAGAGG
AACGTCTTGGACAAGGCCGCGAAAATGCGAAACAGTTCCTAAAAGAAAATAAAGATATCATGCTGATGATTCAGGAGCAA
ATTCGTGAACATTACGGCTTGGATAATAACGGAGTAGCGCAGCAGGAAGCTGAAGAGGCGCTAGAAGTTTTAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

97.289

96.232

0.936
  recA Latilactobacillus sakei subsp. sakei 23K

74.618

94.783

0.707
  recA Streptococcus mitis NCTC 12261

67.147

100

0.675
  recA Streptococcus pneumoniae D39

67.836

99.13

0.672
  recA Streptococcus pneumoniae Rx1

67.836

99.13

0.672
  recA Streptococcus pneumoniae R6

67.836

99.13

0.672
  recA Streptococcus pneumoniae TIGR4

67.836

99.13

0.672
  recA Streptococcus mitis SK321

66.571

100

0.67
  recA Streptococcus mutans UA159

66.764

99.42

0.664
  recA Streptococcus pyogenes NZ131

67.988

95.072

0.646
  recA Lactococcus lactis subsp. cremoris KW2

65.875

97.681

0.643
  recA Neisseria gonorrhoeae strain FA1090

65.138

94.783

0.617
  recA Neisseria gonorrhoeae MS11

65.138

94.783

0.617
  recA Neisseria gonorrhoeae MS11

65.138

94.783

0.617
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.353

98.551

0.614
  recA Ralstonia pseudosolanacearum GMI1000

64.526

94.783

0.612
  recA Helicobacter pylori strain NCTC11637

64.615

94.203

0.609
  recA Helicobacter pylori 26695

64.615

94.203

0.609
  recA Acinetobacter baumannii D1279779

61.224

99.42

0.609
  recA Acinetobacter baylyi ADP1

60.58

100

0.606
  recA Glaesserella parasuis strain SC1401

61.424

97.681

0.6
  recA Vibrio cholerae strain A1552

64.174

93.043

0.597
  recA Vibrio cholerae O1 biovar El Tor strain E7946

64.174

93.043

0.597
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.783

0.591
  recA Pseudomonas stutzeri DSM 10701

63.125

92.754

0.586
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.312

92.754

0.559

Multiple sequence alignment