Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C5Y82_RS08130 Genome accession   NZ_CP027034
Coordinates   1630804..1632054 (+) Length   416 a.a.
NCBI ID   WP_012010019.1    Uniprot ID   A8FDG2
Organism   Bacillus pumilus strain 150a     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1625804..1637054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C5Y82_RS08105 (C5Y82_08105) - 1627213..1627941 (+) 729 WP_088001386.1 SDR family oxidoreductase -
  C5Y82_RS08110 (C5Y82_08110) - 1628015..1628272 (+) 258 WP_003211590.1 DUF3243 domain-containing protein -
  C5Y82_RS08115 (C5Y82_08115) - 1628404..1629195 (+) 792 WP_003211480.1 DUF3388 domain-containing protein -
  C5Y82_RS08120 (C5Y82_08120) - 1629219..1630130 (+) 912 WP_088001384.1 helix-turn-helix domain-containing protein -
  C5Y82_RS08125 (C5Y82_08125) pgsA 1630206..1630787 (+) 582 WP_012010018.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C5Y82_RS08130 (C5Y82_08130) cinA 1630804..1632054 (+) 1251 WP_012010019.1 competence/damage-inducible protein A Machinery gene
  C5Y82_RS08135 (C5Y82_08135) recA 1632231..1633268 (+) 1038 WP_119124862.1 recombinase RecA Machinery gene
  C5Y82_RS08140 (C5Y82_08140) - 1633413..1634588 (+) 1176 WP_119124863.1 serine hydrolase domain-containing protein -
  C5Y82_RS08145 (C5Y82_08145) rny 1634822..1636384 (+) 1563 WP_003211958.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45689.86 Da        Isoelectric Point: 5.0652

>NTDB_id=274646 C5Y82_RS08130 WP_012010019.1 1630804..1632054(+) (cinA) [Bacillus pumilus strain 150a]
MKSERKAEIIAVGSELLLGQITNTNAQFISKQLAEIGVNVYYHTAVGDNPERLKRAIQVAQERSNFIIFSGGLGPTKDDL
TKETIASTLGKELVLNEEAFESIQEYFRKTGRDMSPNNRKQALVLEGSDVLVNRFGMAPGMFIQENDTFYMLLPGPPSEL
HPMFENEAKPLISEKLGLKEKIVSVVLRFFGIGESQLETDLEDLIDAQTNPTIAPLASDGEVTLRLTAKHEDEKETERLL
KETEAKILARVGEYFYGYGETSLVREASKALRDHGKTVAAAESLTGGMFSEWLTDLEGASSILSGSIVCYTNQVKQQVLG
CREETLSSHGAVSKECALELAEGVRKLTGSDIGISFTGVAGPDTHEGQPVGKVFIGLSTKDHTDVFEWMFTGSRSGIRKR
AVKYGLHHLLNLLKES

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=274646 C5Y82_RS08130 WP_012010019.1 1630804..1632054(+) (cinA) [Bacillus pumilus strain 150a]
TTGAAGTCAGAGAGAAAAGCAGAAATTATTGCAGTCGGTTCCGAACTTTTGCTAGGGCAAATTACGAATACGAATGCACA
ATTCATCAGCAAACAGCTAGCTGAAATTGGTGTGAATGTTTATTACCATACAGCAGTTGGTGACAATCCAGAGCGTTTAA
AAAGAGCCATTCAAGTGGCGCAGGAAAGATCGAATTTTATTATCTTCTCAGGTGGTCTTGGACCAACAAAAGATGATTTA
ACAAAAGAAACCATTGCGAGCACGCTCGGAAAAGAGCTTGTGCTAAATGAAGAAGCATTTGAATCCATTCAAGAATACTT
TCGAAAGACTGGACGAGACATGTCACCAAATAACCGAAAACAGGCACTCGTTCTAGAAGGATCTGATGTGCTCGTGAACC
GGTTTGGGATGGCTCCGGGTATGTTCATTCAAGAAAACGATACGTTTTATATGCTTCTTCCAGGCCCGCCAAGTGAACTG
CATCCGATGTTTGAGAACGAGGCAAAACCGCTCATATCTGAGAAACTGGGTTTAAAGGAAAAAATCGTGTCTGTTGTTCT
CCGTTTCTTTGGAATTGGTGAATCACAGCTTGAAACAGACCTAGAAGATTTAATTGATGCTCAAACCAATCCAACGATTG
CACCTCTTGCATCTGACGGTGAAGTGACACTTAGGCTCACGGCTAAGCATGAGGATGAAAAAGAAACGGAGCGTCTGTTA
AAAGAGACGGAAGCGAAAATTTTAGCGCGAGTAGGAGAGTACTTCTACGGGTATGGTGAGACATCACTTGTCCGCGAAGC
TTCCAAGGCCTTGCGCGATCACGGGAAAACAGTGGCAGCGGCTGAGAGCCTAACAGGCGGAATGTTTTCTGAATGGCTGA
CAGATCTTGAAGGTGCGTCGTCGATTTTAAGCGGCAGTATCGTTTGTTATACAAACCAAGTCAAACAGCAGGTGCTTGGC
TGCCGGGAGGAAACATTGTCCTCTCATGGTGCTGTCAGCAAAGAATGTGCTTTAGAGCTTGCTGAAGGTGTTAGAAAGCT
CACGGGAAGTGATATTGGCATTAGCTTTACGGGTGTAGCAGGCCCTGATACCCACGAGGGACAGCCGGTCGGAAAAGTGT
TCATCGGGCTATCTACGAAAGACCATACAGACGTGTTTGAATGGATGTTTACTGGAAGCCGGTCGGGCATTCGCAAACGC
GCTGTGAAATACGGTTTGCATCACTTGCTCAATTTATTAAAAGAAAGTTAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(186-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)

Competence-damaged protein (CinA)

(262-412)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8FDG2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

73.976

99.76

0.738
  cinA Streptococcus mutans UA159

48.317

100

0.483
  cinA Streptococcus mitis SK321

47.743

100

0.483
  cinA Streptococcus mitis NCTC 12261

47.506

100

0.481
  cinA Streptococcus pneumoniae TIGR4

47.506

100

0.481
  cinA Streptococcus pneumoniae Rx1

47.268

100

0.478
  cinA Streptococcus pneumoniae R6

47.268

100

0.478
  cinA Streptococcus pneumoniae D39

47.031

100

0.476
  cinA Streptococcus suis isolate S10

43.122

90.865

0.392

Multiple sequence alignment