Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   FORC77_RS02755 Genome accession   NZ_CP027030
Coordinates   564417..565466 (+) Length   349 a.a.
NCBI ID   WP_123773058.1    Uniprot ID   -
Organism   Vibrio vulnificus strain FORC_077     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 559417..570466
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FORC77_RS02740 (FORC77_0491) rpoS 560067..561059 (+) 993 WP_045596855.1 RNA polymerase sigma factor RpoS Regulator
  FORC77_RS02745 (FORC77_0492) mutS 561135..563696 (-) 2562 WP_131069645.1 DNA mismatch repair protein MutS -
  FORC77_RS02750 (FORC77_0493) pncC 563780..564283 (+) 504 WP_131069646.1 nicotinamide-nucleotide amidase -
  FORC77_RS02755 (FORC77_0494) recA 564417..565466 (+) 1050 WP_123773058.1 recombinase RecA Machinery gene
  FORC77_RS02760 (FORC77_0495) recX 565570..566031 (+) 462 WP_123773057.1 recombination regulator RecX -
  FORC77_RS02765 (FORC77_0496) alaS 566211..568793 (+) 2583 WP_011151142.1 alanine--tRNA ligase -
  FORC77_RS02770 (FORC77_0497) - 568990..570177 (+) 1188 WP_011151141.1 aspartate kinase -
  FORC77_RS02775 (FORC77_0498) csrA 570269..570460 (+) 192 WP_011079528.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37701.27 Da        Isoelectric Point: 4.8857

>NTDB_id=274587 FORC77_RS02755 WP_123773058.1 564417..565466(+) (recA) [Vibrio vulnificus strain FORC_077]
MDENKQKALAAALGQIEKQFGKGSIMRLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLELIA
AAQREGKTCAFIDAEHALDPVYAKKLGVNIDQLLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARMLSQAMRKLTGNLKQSNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQIMYGQGFNREGELIDLGVKCKLIEKSGAWYSYNGDKIGQGKANACKYLKENVDVAKVLDT
KLREMLLSSANISDESAELVEEMPEQEEF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=274587 FORC77_RS02755 WP_123773058.1 564417..565466(+) (recA) [Vibrio vulnificus strain FORC_077]
ATGGACGAGAACAAACAGAAGGCACTGGCCGCCGCACTAGGTCAAATTGAAAAGCAGTTCGGTAAAGGTTCAATCATGCG
CCTAGGTGACAACCGTGCGATGGATGTTGAAACCATCTCGACAGGTTCACTATCTCTGGATATTGCGCTGGGTGCGGGTG
GCTTACCAATGGGCCGTATCGTTGAAATTTTTGGTCCAGAATCTTCAGGTAAAACCACGTTGACCCTTGAGCTGATCGCT
GCGGCTCAACGTGAAGGCAAAACTTGTGCGTTTATCGATGCCGAGCACGCGTTGGATCCTGTGTATGCGAAGAAGCTTGG
CGTTAATATCGACCAGTTGTTGGTATCTCAGCCTGACACCGGTGAACAAGCATTGGAAATCTGTGATGCTCTTGCTCGCT
CAGGTGCGGTTGACGTTATTGTTGTCGACTCTGTTGCAGCATTGACGCCAAAGGCAGAAATCGAAGGTGAGATGGGCGAC
TCGCACATGGGTCTCCAAGCTCGTATGCTATCTCAAGCGATGCGTAAGCTAACGGGTAACCTAAAGCAGTCTAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATCGGTGTGATGTTTGGTAATCCAGAAACCACAACGGGTGGTAACGCTC
TGAAATTCTACGCTTCTGTTCGTCTTGATATTCGCCGTACTGGTGCGATCAAAGAAGGTGATGAGGTCGTGGGTAACGAA
ACGCGCATCAAAGTGGTGAAGAATAAGATCGCTGCGCCGTTTAAAGAAGCCAACACTCAAATTATGTACGGCCAAGGCTT
TAACCGCGAAGGTGAACTGATTGACCTAGGCGTGAAATGTAAGCTGATTGAAAAATCAGGCGCTTGGTACAGCTATAACG
GCGACAAAATTGGCCAAGGTAAAGCGAACGCTTGTAAATACCTGAAAGAAAACGTAGATGTCGCAAAAGTACTGGATACG
AAATTGCGTGAAATGTTGCTTTCTTCAGCAAACATCAGCGATGAATCGGCAGAGTTAGTCGAAGAAATGCCAGAGCAAGA
AGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae O1 biovar El Tor strain E7946

91.525

100

0.928
  recA Vibrio cholerae strain A1552

91.525

100

0.928
  recA Pseudomonas stutzeri DSM 10701

74.699

95.129

0.711
  recA Glaesserella parasuis strain SC1401

69.602

100

0.702
  recA Acinetobacter baylyi ADP1

70.145

98.854

0.693
  recA Acinetobacter baumannii D1279779

72.948

94.269

0.688
  recA Neisseria gonorrhoeae strain FA1090

65.517

99.713

0.653
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Neisseria gonorrhoeae MS11

65.517

99.713

0.653
  recA Ralstonia pseudosolanacearum GMI1000

69.113

93.696

0.648
  recA Helicobacter pylori strain NCTC11637

59.884

98.567

0.59
  recA Streptococcus pneumoniae Rx1

58.857

100

0.59
  recA Streptococcus pneumoniae TIGR4

58.857

100

0.59
  recA Streptococcus pneumoniae D39

58.857

100

0.59
  recA Streptococcus pneumoniae R6

58.857

100

0.59
  recA Helicobacter pylori 26695

59.593

98.567

0.587
  recA Latilactobacillus sakei subsp. sakei 23K

58.96

99.14

0.585
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.241

90.544

0.582
  recA Bacillus subtilis subsp. subtilis str. 168

63.24

91.977

0.582
  recA Streptococcus mitis SK321

61.92

92.55

0.573
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.423

94.842

0.573
  recA Streptococcus mitis NCTC 12261

61.61

92.55

0.57
  recA Lactococcus lactis subsp. cremoris KW2

61.61

92.55

0.57
  recA Streptococcus pyogenes NZ131

60.615

93.123

0.564
  recA Streptococcus mutans UA159

60.615

93.123

0.564
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.258

88.825

0.553

Multiple sequence alignment