Detailed information NTG0274585

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: FORC77_RS02740
• Genome accession: NZ_CP027030
• Coordinates: 560067..561059 (+)
• Length: 330 a.a.
• NCBI ID: WP_045596855.1
• Uniprot ID: A0AAN1PM43
• Organism: Vibrio vulnificus strain FORC_077
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 555067..566059

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
FORC77_RS02705 (FORC77_0484)	ftsB	555098..555379 (+)	282	WP_011079514.1	cell division protein FtsB	-
FORC77_RS02710 (FORC77_0485)	ispD	555379..556092 (+)	714	WP_131069643.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
FORC77_RS02715 (FORC77_0486)	ispF	556089..556565 (+)	477	WP_131069644.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
FORC77_RS02720 (FORC77_0487)	truD	556601..557644 (+)	1044	WP_013571124.1	tRNA pseudouridine(13) synthase TruD	-
FORC77_RS02725 (FORC77_0488)	surE	557650..558417 (+)	768	WP_013571125.1	5'/3'-nucleotidase SurE	-
FORC77_RS02730 (FORC77_0489)	-	558420..559046 (+)	627	WP_011079519.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
FORC77_RS02735 (FORC77_0490)	-	559090..559986 (+)	897	WP_131070119.1	peptidoglycan DD-metalloendopeptidase family protein	-
FORC77_RS02740 (FORC77_0491)	rpoS	560067..561059 (+)	993	WP_045596855.1	RNA polymerase sigma factor RpoS	Regulator
FORC77_RS02745 (FORC77_0492)	mutS	561135..563696 (-)	2562	WP_131069645.1	DNA mismatch repair protein MutS	-
FORC77_RS02750 (FORC77_0493)	pncC	563780..564283 (+)	504	WP_131069646.1	nicotinamide-nucleotide amidase	-
FORC77_RS02755 (FORC77_0494)	recA	564417..565466 (+)	1050	WP_123773058.1	recombinase RecA	Machinery gene
FORC77_RS02760 (FORC77_0495)	recX	565570..566031 (+)	462	WP_123773057.1	recombination regulator RecX	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 38041.08 Da
• Isoelectric Point: 4.4791

>NTDB_id=274585 FORC77_RS02740 WP_045596855.1 560067..561059(+) (rpoS) [Vibrio vulnificus strain FORC_077]
MSISNTVTKVKDFDVNQMDDDFNDDIEINEKEDLTEEKVTLREEFDASNKSLDATQLYLGEIGFSPLLTAEEEVLYARRA
LRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTR
TIRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLEIPVDDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANN
SDPEVSTQDEDMRVSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGQEIGLTRERVRQIQVEGLRRLREVLIKQGLN
MENLFDIDMD

Nucleotide

• Length: 993 bp

>NTDB_id=274585 FORC77_RS02740 WP_045596855.1 560067..561059(+) (rpoS) [Vibrio vulnificus strain FORC_077]
ATGAGTATCAGCAACACAGTCACCAAAGTTAAAGATTTCGATGTTAATCAGATGGATGATGATTTTAACGACGATATCGA
GATTAATGAAAAAGAAGATCTTACCGAAGAAAAAGTCACACTTCGCGAGGAGTTTGACGCCAGCAACAAGAGCTTAGACG
CGACACAGCTCTATCTAGGAGAAATTGGTTTTTCTCCACTATTAACCGCAGAAGAAGAAGTTCTTTATGCTCGACGTGCA
TTACGAGGCGATGAAGCCGCACGTAAACGTATGATTGAAAGTAACTTACGTCTAGTGGTTAAGATTTCCCGCCGTTACAG
TAATCGCGGTCTTGCACTGCTTGATTTGATTGAAGAGGGTAACCTTGGTTTGATCCGCGCGGTAGAGAAATTCGATCCAG
AGCGTGGTTTCCGCTTCTCAACTTACGCGACATGGTGGATTCGCCAAACCATCGAACGTGCTTTAATGAATCAGACTCGA
ACCATCCGTTTACCTATCCATGTTGTTAAAGAGCTGAACATTTATCTACGTACGGCGCGTGAACTTTCTCAAAAACTCGA
TCATGAGCCAACCGCTGAAGAGATCGCTGCGCAACTGGAGATTCCGGTTGACGATGTGAGCAAAATGCTGCGTTTGAACG
AGCGCATTAGTTCTGTCGATACACCGATTGGTGGAGATGGAGAGAAGGCGTTATTGGATATTATTCCTGATGCAAACAAC
TCTGACCCAGAGGTTTCAACGCAAGATGAAGACATGCGTGTTTCCTTGATTCATTGGTTGGAAGAGCTCAATCCGAAACA
AAAAGAAGTGTTGGCACGTCGCTTTGGTTTGTTGGGTTATGAGCCTTCAACGCTGGAAGAGGTTGGGCAAGAGATTGGTT
TAACTCGCGAGCGAGTACGCCAGATTCAGGTTGAAGGGTTACGTCGCCTCCGTGAAGTTCTGATCAAACAAGGTCTGAAT
ATGGAAAATTTGTTTGATATAGATATGGATTGA

Domains

Predicted by InterproScan.

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (53-86)

• Sigma-70, region 4 (Sigma70_r4) (259-312)

• Sigma-70 region 3 (Sigma70_r3) (171-244)

• Sigma-70 region 2 (Sigma70_r2) (91-160)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	81.602	100	0.833