Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   MMC1_RS08205 Genome accession   NC_008576
Coordinates   1991625..1992770 (+) Length   381 a.a.
NCBI ID   WP_227665308.1    Uniprot ID   -
Organism   Magnetococcus marinus MC-1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1986625..1997770
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MMC1_RS08185 (Mmc1_1606) lsrF 1988077..1988955 (-) 879 WP_011713263.1 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase -
  MMC1_RS08190 (Mmc1_1607) - 1989129..1989713 (-) 585 WP_011713264.1 FlgO family outer membrane protein -
  MMC1_RS19880 (Mmc1_1608) - 1989713..1990330 (-) 618 WP_011713265.1 FlgO family outer membrane protein -
  MMC1_RS08200 (Mmc1_1609) pilT 1990347..1991384 (-) 1038 WP_011713266.1 type IV pilus twitching motility protein PilT Machinery gene
  MMC1_RS08205 (Mmc1_1610) recA 1991625..1992770 (+) 1146 WP_227665308.1 recombinase RecA Machinery gene
  MMC1_RS08210 (Mmc1_1611) parC 1992908..1995172 (+) 2265 WP_011713268.1 DNA topoisomerase IV subunit A -
  MMC1_RS08215 (Mmc1_1612) - 1995221..1995763 (+) 543 WP_011713269.1 TRAP transporter small permease subunit -
  MMC1_RS08220 (Mmc1_1613) - 1995763..1997148 (+) 1386 WP_011713270.1 TRAP transporter large permease subunit -

Sequence

Protein


Download         Length: 381 a.a.        Molecular weight: 40355.87 Da        Isoelectric Point: 5.7961

>NTDB_id=26856 MMC1_RS08205 WP_227665308.1 1991625..1992770(+) (recA) [Magnetococcus marinus MC-1]
MALDKDKSKALDAALAQIERQFGKGSIMRMSEGAATDIPVVSTGSLGLDIALGVGGLPRGRIVEVYGPESSGKTTMALHV
AAEIQKVGGVAAFVDAEHALDPIYARKLGVNVDELIISQPDTGEQALEITDMLVRSGAVDLVVVDSVAALTPRAELEGEM
GDSHVGLQARLMSQALRKLTGSISRSSSLVLFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRIGSIKDKEEVVG
NRTRVKVVKNKMAPPFRQCEFDITYGQGVSLHGELLDMGVEMGVVEKSGAWYSYDGERIGQGRENAKRYMAENPSAAMKL
EDQIRLKEGLSAKHGAGQSPATETKGVPSPKSGSSAKGSSRAAKAAAAEEDSTEDSFADDA

Nucleotide


Download         Length: 1146 bp        

>NTDB_id=26856 MMC1_RS08205 WP_227665308.1 1991625..1992770(+) (recA) [Magnetococcus marinus MC-1]
ATGGCTTTGGATAAAGATAAGAGCAAAGCACTGGATGCCGCGCTGGCTCAAATTGAACGTCAGTTTGGTAAAGGCAGCAT
CATGCGCATGAGCGAAGGTGCCGCGACCGATATTCCTGTGGTCTCCACCGGTTCCCTCGGCTTGGATATTGCCTTGGGTG
TGGGCGGCCTGCCCCGTGGCCGTATTGTCGAAGTGTATGGACCAGAATCCTCCGGCAAAACCACCATGGCCCTGCATGTG
GCCGCAGAAATTCAGAAAGTGGGTGGGGTGGCCGCTTTCGTCGATGCCGAGCATGCACTGGATCCTATCTATGCGCGCAA
GTTGGGTGTCAATGTGGATGAGCTGATCATCTCCCAGCCCGATACCGGGGAACAGGCCCTGGAAATTACCGATATGCTGG
TACGCTCTGGCGCGGTGGACTTGGTGGTGGTGGACTCGGTGGCGGCGCTGACGCCACGGGCCGAGTTGGAAGGGGAGATG
GGGGACTCTCACGTGGGTCTACAAGCCCGTCTGATGTCCCAAGCGCTGCGCAAATTAACCGGTAGCATTAGCCGGTCGAG
CTCATTGGTGCTGTTTATTAACCAGATCCGTATGAAAATCGGTGTCATGTTTGGTAGCCCAGAGACCACCACCGGGGGGA
ATGCCCTCAAGTTCTATGCCTCGGTACGTCTGGATATTCGCCGCATTGGCTCCATTAAGGATAAAGAAGAGGTGGTGGGC
AACCGCACCCGCGTCAAAGTGGTAAAAAATAAAATGGCCCCTCCCTTCCGCCAGTGCGAATTTGATATCACCTATGGACA
GGGGGTCTCTCTGCATGGCGAACTGCTGGATATGGGCGTGGAGATGGGCGTGGTCGAAAAGTCCGGCGCTTGGTACTCCT
ATGACGGTGAGCGCATCGGCCAAGGCCGAGAAAATGCCAAACGCTACATGGCAGAAAACCCCAGTGCAGCCATGAAACTG
GAAGATCAAATCCGTCTTAAAGAGGGCTTAAGCGCTAAACATGGTGCGGGCCAAAGCCCCGCAACCGAAACCAAAGGCGT
GCCCAGCCCCAAGAGTGGTTCCTCTGCCAAAGGCTCGTCGAGAGCAGCCAAAGCCGCCGCAGCCGAAGAGGATTCAACCG
AAGATAGCTTTGCCGACGATGCCTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(9-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Neisseria gonorrhoeae MS11

67.836

89.764

0.609
  recA Neisseria gonorrhoeae strain FA1090

67.836

89.764

0.609
  recA Neisseria gonorrhoeae MS11

67.836

89.764

0.609
  recA Pseudomonas stutzeri DSM 10701

70.769

85.302

0.604
  recA Ralstonia pseudosolanacearum GMI1000

72.293

82.415

0.596
  recA Acinetobacter baumannii D1279779

66.667

88.189

0.588
  recA Acinetobacter baylyi ADP1

69.04

84.777

0.585
  recA Glaesserella parasuis strain SC1401

69.279

83.727

0.58
  recA Vibrio cholerae O1 biovar El Tor strain E7946

68.111

84.777

0.577
  recA Vibrio cholerae strain A1552

68.111

84.777

0.577
  recA Latilactobacillus sakei subsp. sakei 23K

64.412

89.239

0.575
  recA Bacillus subtilis subsp. subtilis str. 168

66.154

85.302

0.564
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.69

88.189

0.562
  recA Streptococcus mitis SK321

59.195

91.339

0.541
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.31

86.352

0.538
  recA Helicobacter pylori 26695

62.195

86.089

0.535
  recA Streptococcus pneumoniae Rx1

61.702

86.352

0.533
  recA Streptococcus pneumoniae TIGR4

61.702

86.352

0.533
  recA Streptococcus pneumoniae R6

61.702

86.352

0.533
  recA Streptococcus pneumoniae D39

61.702

86.352

0.533
  recA Helicobacter pylori strain NCTC11637

61.89

86.089

0.533
  recA Streptococcus mitis NCTC 12261

61.094

86.352

0.528
  recA Lactococcus lactis subsp. cremoris KW2

59.819

86.877

0.52
  recA Streptococcus pyogenes NZ131

60.061

86.089

0.517
  recA Streptococcus mutans UA159

59.878

86.352

0.517
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.125

84.252

0.507

Multiple sequence alignment