Detailed information
Bioinformatically predicted
Overview
| Name | pilT | Type | Machinery gene |
| Locus tag | MMC1_RS08200 | Genome accession | NC_008576 |
| Coordinates | 1990347..1991384 (-) | Length | 345 a.a. |
| NCBI ID | WP_011713266.1 | Uniprot ID | - |
| Organism | Magnetococcus marinus MC-1 | ||
| Function | type IV pilus retraction (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1985347..1996384
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MMC1_RS08180 (Mmc1_1605) | - | 1985917..1987989 (-) | 2073 | WP_011713262.1 | bifunctional aldolase/short-chain dehydrogenase | - |
| MMC1_RS08185 (Mmc1_1606) | lsrF | 1988077..1988955 (-) | 879 | WP_011713263.1 | 3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase | - |
| MMC1_RS08190 (Mmc1_1607) | - | 1989129..1989713 (-) | 585 | WP_011713264.1 | FlgO family outer membrane protein | - |
| MMC1_RS19880 (Mmc1_1608) | - | 1989713..1990330 (-) | 618 | WP_011713265.1 | FlgO family outer membrane protein | - |
| MMC1_RS08200 (Mmc1_1609) | pilT | 1990347..1991384 (-) | 1038 | WP_011713266.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| MMC1_RS08205 (Mmc1_1610) | recA | 1991625..1992770 (+) | 1146 | WP_227665308.1 | recombinase RecA | Machinery gene |
| MMC1_RS08210 (Mmc1_1611) | parC | 1992908..1995172 (+) | 2265 | WP_011713268.1 | DNA topoisomerase IV subunit A | - |
| MMC1_RS08215 (Mmc1_1612) | - | 1995221..1995763 (+) | 543 | WP_011713269.1 | TRAP transporter small permease subunit | - |
Sequence
Protein
Download Length: 345 a.a. Molecular weight: 37912.45 Da Isoelectric Point: 6.4196
>NTDB_id=26855 MMC1_RS08200 WP_011713266.1 1990347..1991384(-) (pilT) [Magnetococcus marinus MC-1]
MELNDLLTFIVQNGGSDLHLSAGLPPMVRIDGDVRRIDVPTQSSDDVLAMLHGIMNDVQKQSFTETHESDFSFALEGVAR
FRVNAFMQQRGVSAVLRTIPSEVLTLEQLGAPEIFKEIAATPRGIVLVTGPTGSGKSTTLAAMVDYKNSTDYGHILTVED
PIEFVHQSKKSLVSQREVHRDTLSFTNALRAALREDPDTILVGEMRDLETIRLALTAAETGHLVFGTLHTSSAPKTVDRI
VDAFPAAEKDMIRTMLSESLKAVISQVLLKKRGGGRVAVHEIMLGTGAIKNLIRENQVAQMYSSIQTGRKLGMQTLEQGL
QECIQKGLITREQAYEKANVKDQFK
MELNDLLTFIVQNGGSDLHLSAGLPPMVRIDGDVRRIDVPTQSSDDVLAMLHGIMNDVQKQSFTETHESDFSFALEGVAR
FRVNAFMQQRGVSAVLRTIPSEVLTLEQLGAPEIFKEIAATPRGIVLVTGPTGSGKSTTLAAMVDYKNSTDYGHILTVED
PIEFVHQSKKSLVSQREVHRDTLSFTNALRAALREDPDTILVGEMRDLETIRLALTAAETGHLVFGTLHTSSAPKTVDRI
VDAFPAAEKDMIRTMLSESLKAVISQVLLKKRGGGRVAVHEIMLGTGAIKNLIRENQVAQMYSSIQTGRKLGMQTLEQGL
QECIQKGLITREQAYEKANVKDQFK
Nucleotide
Download Length: 1038 bp
>NTDB_id=26855 MMC1_RS08200 WP_011713266.1 1990347..1991384(-) (pilT) [Magnetococcus marinus MC-1]
ATGGAACTGAACGATCTGCTCACTTTTATCGTCCAGAATGGCGGCTCAGATCTCCACCTCTCTGCCGGGCTGCCCCCCAT
GGTGCGGATTGATGGGGATGTGCGGCGCATCGACGTACCCACCCAATCCAGTGACGATGTGCTGGCTATGCTGCACGGTA
TTATGAACGATGTGCAGAAACAGAGCTTTACCGAAACCCATGAATCCGACTTTTCATTTGCGTTGGAGGGGGTTGCCCGT
TTTCGCGTCAACGCCTTCATGCAGCAACGGGGGGTGAGCGCGGTACTGCGGACCATTCCTTCCGAGGTGCTCACCCTGGA
ACAGCTGGGTGCCCCTGAGATTTTTAAGGAGATTGCCGCCACCCCACGGGGCATTGTATTGGTCACGGGCCCCACCGGTT
CGGGCAAATCCACCACACTGGCGGCTATGGTGGATTATAAAAACAGTACCGATTATGGGCACATTCTCACGGTGGAAGAC
CCCATCGAATTTGTACACCAGTCAAAAAAGAGTCTGGTTAGCCAACGCGAGGTGCATCGCGATACCCTAAGTTTCACCAA
CGCCCTCCGGGCTGCCCTACGGGAAGATCCCGACACCATCTTGGTTGGGGAGATGCGGGATTTGGAGACCATTCGTCTGG
CTCTAACCGCCGCCGAGACCGGTCACTTGGTGTTTGGTACCCTGCATACCAGCTCCGCGCCCAAGACGGTGGATCGTATT
GTGGACGCCTTTCCTGCTGCGGAAAAAGATATGATCCGCACCATGTTATCCGAATCCCTTAAAGCGGTGATCTCGCAAGT
GCTGTTAAAAAAACGCGGCGGTGGGCGGGTTGCGGTACACGAAATTATGCTCGGCACGGGTGCCATTAAAAACCTGATTC
GGGAGAATCAGGTTGCCCAGATGTACTCATCCATTCAAACAGGCCGCAAGCTAGGCATGCAAACTTTGGAACAAGGTTTG
CAAGAGTGCATACAGAAGGGTCTCATCACCCGCGAGCAGGCCTACGAAAAGGCCAACGTCAAAGACCAGTTCAAATAA
ATGGAACTGAACGATCTGCTCACTTTTATCGTCCAGAATGGCGGCTCAGATCTCCACCTCTCTGCCGGGCTGCCCCCCAT
GGTGCGGATTGATGGGGATGTGCGGCGCATCGACGTACCCACCCAATCCAGTGACGATGTGCTGGCTATGCTGCACGGTA
TTATGAACGATGTGCAGAAACAGAGCTTTACCGAAACCCATGAATCCGACTTTTCATTTGCGTTGGAGGGGGTTGCCCGT
TTTCGCGTCAACGCCTTCATGCAGCAACGGGGGGTGAGCGCGGTACTGCGGACCATTCCTTCCGAGGTGCTCACCCTGGA
ACAGCTGGGTGCCCCTGAGATTTTTAAGGAGATTGCCGCCACCCCACGGGGCATTGTATTGGTCACGGGCCCCACCGGTT
CGGGCAAATCCACCACACTGGCGGCTATGGTGGATTATAAAAACAGTACCGATTATGGGCACATTCTCACGGTGGAAGAC
CCCATCGAATTTGTACACCAGTCAAAAAAGAGTCTGGTTAGCCAACGCGAGGTGCATCGCGATACCCTAAGTTTCACCAA
CGCCCTCCGGGCTGCCCTACGGGAAGATCCCGACACCATCTTGGTTGGGGAGATGCGGGATTTGGAGACCATTCGTCTGG
CTCTAACCGCCGCCGAGACCGGTCACTTGGTGTTTGGTACCCTGCATACCAGCTCCGCGCCCAAGACGGTGGATCGTATT
GTGGACGCCTTTCCTGCTGCGGAAAAAGATATGATCCGCACCATGTTATCCGAATCCCTTAAAGCGGTGATCTCGCAAGT
GCTGTTAAAAAAACGCGGCGGTGGGCGGGTTGCGGTACACGAAATTATGCTCGGCACGGGTGCCATTAAAAACCTGATTC
GGGAGAATCAGGTTGCCCAGATGTACTCATCCATTCAAACAGGCCGCAAGCTAGGCATGCAAACTTTGGAACAAGGTTTG
CAAGAGTGCATACAGAAGGGTCTCATCACCCGCGAGCAGGCCTACGAAAAGGCCAACGTCAAAGACCAGTTCAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilT | Pseudomonas stutzeri DSM 10701 |
69.477 |
99.71 |
0.693 |
| pilT | Pseudomonas aeruginosa PAK |
69.186 |
99.71 |
0.69 |
| pilT | Acinetobacter baumannii D1279779 |
67.442 |
99.71 |
0.672 |
| pilT | Acinetobacter baumannii strain A118 |
67.442 |
99.71 |
0.672 |
| pilT | Acinetobacter nosocomialis M2 |
67.442 |
99.71 |
0.672 |
| pilT | Acinetobacter baylyi ADP1 |
66.86 |
99.71 |
0.667 |
| pilT | Legionella pneumophila strain Lp02 |
65.698 |
99.71 |
0.655 |
| pilT | Legionella pneumophila strain ERS1305867 |
65.698 |
99.71 |
0.655 |
| pilT | Vibrio cholerae O1 biovar El Tor strain E7946 |
65.282 |
97.681 |
0.638 |
| pilT | Vibrio cholerae strain A1552 |
65.282 |
97.681 |
0.638 |
| pilT | Neisseria meningitidis 8013 |
64.012 |
98.261 |
0.629 |
| pilT | Neisseria gonorrhoeae MS11 |
63.717 |
98.261 |
0.626 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
50.435 |
100 |
0.504 |
| pilU | Pseudomonas stutzeri DSM 10701 |
41.618 |
100 |
0.417 |
| pilU | Vibrio cholerae strain A1552 |
41.04 |
100 |
0.412 |
| pilU | Acinetobacter baylyi ADP1 |
38.04 |
100 |
0.383 |