Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   C0971_RS06710 Genome accession   NZ_CP026143
Coordinates   1324466..1325506 (+) Length   346 a.a.
NCBI ID   WP_003349162.1    Uniprot ID   I3DZI6
Organism   Bacillus methanolicus strain DFS2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1319466..1330506
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS06685 (C0971_06740) - 1320112..1320369 (+) 258 WP_003349157.1 DUF3243 domain-containing protein -
  C0971_RS06690 (C0971_06745) - 1320558..1321349 (+) 792 WP_003349158.1 DUF3388 domain-containing protein -
  C0971_RS06695 (C0971_06750) - 1321371..1322270 (+) 900 WP_248893618.1 helix-turn-helix domain-containing protein -
  C0971_RS06700 (C0971_06755) pgsA 1322335..1322913 (+) 579 WP_248893954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C0971_RS06705 (C0971_06760) cinA 1322938..1324188 (+) 1251 WP_248893619.1 competence/damage-inducible protein A Machinery gene
  C0971_RS06710 (C0971_06765) recA 1324466..1325506 (+) 1041 WP_003349162.1 recombinase RecA Machinery gene
  C0971_RS06715 (C0971_06770) rny 1325788..1327347 (+) 1560 WP_003349163.1 ribonuclease Y -
  C0971_RS06720 (C0971_06775) - 1327433..1328230 (+) 798 WP_003349164.1 TIGR00282 family metallophosphoesterase -
  C0971_RS06725 (C0971_06780) spoVS 1328514..1328774 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37892.09 Da        Isoelectric Point: 4.7329

>NTDB_id=267515 C0971_RS06710 WP_003349162.1 1324466..1325506(+) (recA) [Bacillus methanolicus strain DFS2]
MSDRQAALEMALKQIEKQFGKGSIMKLGEQTDRRISTVPSGSLALDAALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQALGGQAAFIDAEHALDPIYAQKLGVDIDELLLSQPDTGEQALEIAEALVRSGAVDIIVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTIRLEVRRAEQLKQGNDMVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGSELDIIQKSGSWYSYNDERLGQGRENAKQYLKENVELRNEIQQK
IRDYFGLDEVKTVTETEEQEEFDLLD

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=267515 C0971_RS06710 WP_003349162.1 1324466..1325506(+) (recA) [Bacillus methanolicus strain DFS2]
GTGAGTGATCGACAAGCTGCCTTAGAAATGGCGTTAAAGCAAATAGAAAAACAGTTTGGTAAAGGCTCGATTATGAAACT
TGGAGAGCAGACAGACCGAAGAATTTCAACCGTGCCAAGCGGATCGCTTGCACTTGATGCTGCGCTTGGAGTAGGCGGGT
ATCCGCGCGGACGGATTATCGAAATTTACGGGCCTGAGAGTTCAGGTAAAACGACAGTTGCTCTCCATGCGATTGCGGAA
GTTCAGGCACTGGGCGGACAAGCTGCGTTTATTGATGCGGAGCACGCTCTTGATCCGATATATGCTCAAAAACTTGGAGT
TGATATTGATGAGCTGCTTCTTTCCCAGCCGGATACAGGGGAGCAGGCATTGGAAATCGCTGAAGCGTTGGTAAGAAGCG
GCGCTGTTGACATTATTGTTATTGACTCTGTTGCAGCACTTGTTCCAAAAGCGGAGATAGAAGGGGAAATGGGAGATTCT
CATGTCGGGCTCCAAGCACGCCTTATGTCTCAAGCACTTCGCAAGCTGTCAGGTGCAATTAATAAATCGAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAGAAAGTAGGAGTTATGTTTGGAAACCCAGAAACGACTCCAGGCGGACGTGCGCTAA
AATTTTATTCTACGATCCGTTTGGAAGTGCGCCGTGCTGAACAATTAAAGCAAGGTAATGATATGGTCGGAAATAAAACC
AAAATAAAAGTTGTAAAAAATAAGGTCGCTCCTCCATTCCGCACAGCTGAAGTTGATATTATGTACGGGGAAGGCATTTC
GAAAGAGGGCGAAATCATTGACTTGGGTTCCGAATTGGATATTATCCAGAAAAGCGGTTCATGGTATTCGTACAATGATG
AGCGCTTAGGCCAGGGCCGCGAAAATGCAAAACAATATTTGAAAGAAAACGTGGAACTCCGAAATGAGATTCAGCAAAAA
ATCAGGGATTACTTTGGCCTTGATGAAGTGAAAACAGTAACTGAAACAGAAGAACAGGAAGAATTTGACTTGTTAGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I3DZI6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.634

94.798

0.85
  recA Latilactobacillus sakei subsp. sakei 23K

72.965

99.422

0.725
  recA Streptococcus mitis SK321

65.833

100

0.685
  recA Streptococcus pneumoniae R6

67.052

100

0.671
  recA Streptococcus pneumoniae Rx1

67.052

100

0.671
  recA Streptococcus pneumoniae D39

67.052

100

0.671
  recA Streptococcus pneumoniae TIGR4

67.052

100

0.671
  recA Streptococcus mitis NCTC 12261

67.347

99.133

0.668
  recA Streptococcus pyogenes NZ131

68.598

94.798

0.65
  recA Streptococcus mutans UA159

65.598

99.133

0.65
  recA Lactococcus lactis subsp. cremoris KW2

67.273

95.376

0.642
  recA Ralstonia pseudosolanacearum GMI1000

66.667

94.509

0.63
  recA Neisseria gonorrhoeae strain FA1090

64.832

94.509

0.613
  recA Neisseria gonorrhoeae MS11

64.832

94.509

0.613
  recA Neisseria gonorrhoeae MS11

64.832

94.509

0.613
  recA Helicobacter pylori 26695

63.415

94.798

0.601
  recA Helicobacter pylori strain NCTC11637

63.415

94.798

0.601
  recA Acinetobacter baylyi ADP1

60.29

99.711

0.601
  recA Acinetobacter baumannii D1279779

60.641

99.133

0.601
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.176

98.266

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.303

94.509

0.598
  recA Glaesserella parasuis strain SC1401

60.058

99.133

0.595
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.467

93.353

0.592
  recA Vibrio cholerae strain A1552

63.467

93.353

0.592
  recA Pseudomonas stutzeri DSM 10701

62.813

92.486

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.422

93.064

0.581

Multiple sequence alignment