Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   C0971_RS06705 Genome accession   NZ_CP026143
Coordinates   1322938..1324188 (+) Length   416 a.a.
NCBI ID   WP_248893619.1    Uniprot ID   -
Organism   Bacillus methanolicus strain DFS2     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1317938..1329188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C0971_RS06680 (C0971_06735) - 1319295..1320017 (+) 723 WP_248893616.1 SDR family oxidoreductase -
  C0971_RS06685 (C0971_06740) - 1320112..1320369 (+) 258 WP_003349157.1 DUF3243 domain-containing protein -
  C0971_RS06690 (C0971_06745) - 1320558..1321349 (+) 792 WP_003349158.1 DUF3388 domain-containing protein -
  C0971_RS06695 (C0971_06750) - 1321371..1322270 (+) 900 WP_248893618.1 helix-turn-helix domain-containing protein -
  C0971_RS06700 (C0971_06755) pgsA 1322335..1322913 (+) 579 WP_248893954.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  C0971_RS06705 (C0971_06760) cinA 1322938..1324188 (+) 1251 WP_248893619.1 competence/damage-inducible protein A Machinery gene
  C0971_RS06710 (C0971_06765) recA 1324466..1325506 (+) 1041 WP_003349162.1 recombinase RecA Machinery gene
  C0971_RS06715 (C0971_06770) rny 1325788..1327347 (+) 1560 WP_003349163.1 ribonuclease Y -
  C0971_RS06720 (C0971_06775) - 1327433..1328230 (+) 798 WP_003349164.1 TIGR00282 family metallophosphoesterase -
  C0971_RS06725 (C0971_06780) spoVS 1328514..1328774 (+) 261 WP_003181955.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45482.58 Da        Isoelectric Point: 5.3818

>NTDB_id=267514 C0971_RS06705 WP_248893619.1 1322938..1324188(+) (cinA) [Bacillus methanolicus strain DFS2]
MNAEIIAVGSELLLGQIVNSNARFISKHLADAGINVFFHSVVGDNPGRLKSVLEVAERRSNIIIFTGGLGPTKDDLTKET
IAAHIGTELVLDDDAFRWIEEFYAKTGMEMTENNQKQALVLKGSQVLKNEHGMAPGMLLDTGKRIYMLLPGPPKEMEPMF
TKYALPALLSKLNMQEKLVSRVIRFFGISEALLEAKVQDIIDQQSNPTIAPLAAEWDVTLRLTAKHSSIETALQLINETE
KLILERVGEYKYGYDDTSLMKELTKVLKQNGLTISCAESLTGGLFQQELTSIPGTTDILKGGVVCYTRESKEKVLLVQKE
TIDKEGVVSEACASELAENAAKIFQSDIGISFTGVAGPEELEGKPAGTVFIGISIKGRPTLVKKVNLAGTREAIRTLTVK
YGCFYLLKLLSESQSA

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=267514 C0971_RS06705 WP_248893619.1 1322938..1324188(+) (cinA) [Bacillus methanolicus strain DFS2]
ATGAACGCGGAAATCATTGCTGTAGGCTCTGAATTGCTGCTTGGACAAATTGTAAACTCGAATGCTCGTTTTATTTCGAA
GCATCTGGCTGATGCGGGAATTAATGTATTTTTTCATTCAGTTGTCGGGGATAACCCCGGACGATTGAAATCTGTTCTCG
AAGTTGCTGAAAGACGTTCTAATATTATTATTTTCACCGGCGGGCTAGGTCCGACGAAAGATGATTTAACAAAAGAGACG
ATTGCTGCTCACATCGGTACAGAACTGGTCTTGGATGATGATGCTTTTCGTTGGATTGAGGAATTTTATGCAAAAACAGG
GATGGAGATGACTGAGAACAATCAAAAACAAGCATTGGTTCTTAAAGGTTCGCAAGTGTTGAAAAACGAACACGGTATGG
CACCGGGCATGCTGCTTGACACGGGTAAACGTATTTACATGCTTTTGCCGGGGCCTCCTAAAGAAATGGAGCCGATGTTT
ACAAAATATGCGCTGCCTGCTCTATTAAGCAAATTGAATATGCAAGAAAAACTTGTATCAAGAGTCATTAGGTTTTTTGG
AATTAGCGAGGCTCTGTTGGAAGCGAAAGTTCAAGATATCATTGATCAGCAAAGCAATCCGACAATTGCTCCGCTTGCTG
CGGAATGGGATGTCACCCTTCGCTTAACAGCAAAACACAGTTCAATTGAAACGGCACTCCAGCTTATTAATGAAACAGAA
AAATTAATCTTAGAGCGTGTTGGAGAGTATAAATACGGATATGACGATACTTCCTTGATGAAAGAACTTACGAAGGTTTT
GAAACAAAATGGCCTGACGATTTCGTGTGCTGAAAGTTTAACAGGCGGGTTGTTCCAACAAGAATTAACTTCTATTCCAG
GAACCACTGACATTCTAAAAGGCGGAGTTGTTTGTTATACCCGGGAGTCGAAAGAGAAAGTGCTCCTCGTTCAAAAAGAA
ACCATTGACAAAGAAGGGGTTGTCAGTGAAGCCTGCGCGTCTGAACTGGCAGAGAATGCTGCTAAAATCTTTCAATCTGA
TATTGGCATCAGCTTTACCGGAGTGGCCGGTCCGGAAGAATTAGAAGGTAAACCGGCAGGCACTGTTTTTATTGGAATTT
CGATTAAGGGCCGTCCAACTCTCGTAAAAAAAGTGAATCTTGCCGGAACTCGGGAGGCCATCCGCACCCTAACAGTTAAA
TATGGATGTTTTTACTTATTAAAATTACTTTCAGAATCACAGAGTGCTTGA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(257-409)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60

98.558

0.591
  cinA Streptococcus mitis SK321

46.698

100

0.476
  cinA Streptococcus mitis NCTC 12261

46.226

100

0.471
  cinA Streptococcus pneumoniae TIGR4

45.755

100

0.466
  cinA Streptococcus pneumoniae Rx1

45.047

100

0.459
  cinA Streptococcus pneumoniae R6

45.047

100

0.459
  cinA Streptococcus pneumoniae D39

44.811

100

0.457
  cinA Streptococcus mutans UA159

45.763

99.279

0.454
  cinA Streptococcus suis isolate S10

39.747

94.952

0.377

Multiple sequence alignment