Detailed information
Bioinformatically predicted
Overview
| Name | recA | Type | Machinery gene |
| Locus tag | LSEI_RS04405 | Genome accession | NC_008526 |
| Coordinates | 899917..900978 (+) | Length | 353 a.a. |
| NCBI ID | WP_011674321.1 | Uniprot ID | Q03AQ0 |
| Organism | Lacticaseibacillus paracasei ATCC 334 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 875550..909170 | 899917..900978 | within | 0 |
Gene organization within MGE regions
Location: 875550..909170
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| LSEI_RS04285 (LSEI_0899) | - | 876256..876891 (-) | 636 | WP_011674312.1 | DsbA family protein | - |
| LSEI_RS04290 (LSEI_0900) | - | 876961..877554 (-) | 594 | WP_003601679.1 | CYTH domain-containing protein | - |
| LSEI_RS04295 (LSEI_0901) | - | 877748..878419 (+) | 672 | WP_011674313.1 | GTP pyrophosphokinase family protein | - |
| LSEI_RS04300 (LSEI_0902) | - | 878421..879218 (+) | 798 | WP_003564146.1 | NAD kinase | - |
| LSEI_RS04305 (LSEI_0903) | - | 879218..880120 (+) | 903 | WP_011674314.1 | RluA family pseudouridine synthase | - |
| LSEI_RS04310 (LSEI_0904) | - | 880229..881287 (-) | 1059 | WP_003569478.1 | FAD:protein FMN transferase | - |
| LSEI_RS04315 (LSEI_0905) | - | 881444..882079 (-) | 636 | WP_003569480.1 | copper homeostasis protein CutC | - |
| LSEI_RS04320 (LSEI_0906) | - | 882101..882919 (-) | 819 | WP_003564150.1 | undecaprenyl-diphosphate phosphatase | - |
| LSEI_RS04325 (LSEI_0907) | - | 883138..884136 (+) | 999 | WP_011674315.1 | IS30 family transposase | - |
| LSEI_RS04330 (LSEI_0908) | - | 884241..885281 (-) | 1041 | WP_003564151.1 | lactonase family protein | - |
| LSEI_RS04335 (LSEI_0909) | - | 885553..885930 (+) | 378 | WP_003564152.1 | PTS glucitol/sorbitol transporter subunit IIA | - |
| LSEI_RS04340 (LSEI_0910) | rpsN | 886043..886312 (-) | 270 | WP_003564153.1 | 30S ribosomal protein S14 | - |
| LSEI_RS04345 (LSEI_0911) | - | 886440..887417 (-) | 978 | WP_032674946.1 | GMP reductase | - |
| LSEI_RS04350 (LSEI_0912) | - | 887657..888605 (-) | 949 | Protein_837 | magnesium transporter CorA family protein | - |
| LSEI_RS04355 (LSEI_0913) | - | 888671..889513 (+) | 843 | WP_003569501.1 | methyltransferase domain-containing protein | - |
| LSEI_RS04360 (LSEI_0914) | trmL | 889767..890276 (+) | 510 | WP_011674316.1 | tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL | - |
| LSEI_RS04365 (LSEI_0915) | - | 890403..890813 (+) | 411 | WP_003564159.1 | DUF1149 family protein | - |
| LSEI_RS04370 (LSEI_0916) | - | 890986..893307 (+) | 2322 | WP_011674317.1 | FtsK/SpoIIIE family DNA translocase | - |
| LSEI_RS04375 (LSEI_0917) | yfmF | 893316..894578 (+) | 1263 | WP_011674318.1 | EF-P 5-aminopentanol modification-associated protein YfmF | - |
| LSEI_RS04380 (LSEI_0918) | yfmH | 894575..895867 (+) | 1293 | WP_011674319.1 | EF-P 5-aminopentanol modification-associated protein YfmH | - |
| LSEI_RS04385 (LSEI_0919) | ymfI | 895867..896595 (+) | 729 | WP_003569514.1 | elongation factor P 5-aminopentanone reductase | - |
| LSEI_RS04390 (LSEI_0920) | - | 896682..897611 (+) | 930 | WP_011674320.1 | helix-turn-helix domain-containing protein | - |
| LSEI_RS04395 (LSEI_0921) | pgsA | 897608..898201 (+) | 594 | WP_003569518.1 | CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase | - |
| LSEI_RS04400 (LSEI_0922) | cinA | 898619..899860 (+) | 1242 | WP_003601723.1 | competence/damage-inducible protein A | Machinery gene |
| LSEI_RS04405 (LSEI_0923) | recA | 899917..900978 (+) | 1062 | WP_011674321.1 | recombinase RecA | Machinery gene |
| LSEI_RS04410 (LSEI_0924) | rny | 901273..902844 (+) | 1572 | WP_003657913.1 | ribonuclease Y | - |
| LSEI_RS04415 (LSEI_0925) | - | 902938..903588 (-) | 651 | WP_003574282.1 | YigZ family protein | - |
| LSEI_RS04420 (LSEI_0926) | - | 903616..904878 (+) | 1263 | WP_011674322.1 | DEAD/DEAH box helicase | - |
| LSEI_RS04425 (LSEI_0927) | - | 905091..905552 (+) | 462 | WP_003583965.1 | ComF family protein | - |
| LSEI_RS04430 (LSEI_0928) | hpf | 905676..906233 (+) | 558 | WP_003569531.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| LSEI_RS04435 (LSEI_0929) | secA | 906567..908930 (+) | 2364 | WP_003578257.1 | preprotein translocase subunit SecA | - |
Sequence
Protein
Download Length: 353 a.a. Molecular weight: 37677.92 Da Isoelectric Point: 5.3229
>NTDB_id=26524 LSEI_RS04405 WP_011674321.1 899917..900978(+) (recA) [Lacticaseibacillus paracasei ATCC 334]
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMASAPCPETASVSEDQPEIPQPAEV
MAGDERQKALDVALKKIEKNFGKGAIMRMGAKADTRVSVVSSGSLAVDDALGVGGFPRGRIVEIYGPESSGKTTVALHAV
AEVQKQGGTAAYIDAENAMDPKYATALGVNIDELLLSQPDTGEQGLEIADELVASGAIDIVVIDSVAALVPRAEIEGDMG
DAHVGLQARLMSQALRKLSGSINKTKTIALFINQIREKVGIIFGSPETTPGGRALKFYATVRLEIRRSEQIKTGADVVGN
RTKIKVVKNKVAPPFRTAIVDIMYGQGISQTGELVDMAVERDIVEKAGSWYAYQGERIGQGRENAKTYLDNHADLQQTIK
QQVRVAYGMASAPCPETASVSEDQPEIPQPAEV
Nucleotide
Download Length: 1062 bp
>NTDB_id=26524 LSEI_RS04405 WP_011674321.1 899917..900978(+) (recA) [Lacticaseibacillus paracasei ATCC 334]
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCAATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCAGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGTTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGACAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCATCCGCACCTTGTCCGGAGACGGCTTCAGTCAGTGAAGATCAACCCGAAAT
ACCTCAACCGGCTGAAGTATGA
ATGGCAGGAGACGAACGCCAGAAAGCATTGGATGTTGCACTGAAAAAGATTGAAAAAAATTTTGGTAAAGGCGCGATTAT
GCGAATGGGTGCTAAGGCGGACACGCGCGTTTCCGTTGTCTCTAGCGGCTCACTTGCCGTTGATGATGCACTTGGTGTTG
GGGGCTTTCCGCGCGGACGAATTGTCGAAATTTATGGACCGGAAAGTTCCGGCAAAACAACCGTCGCGCTGCATGCTGTT
GCTGAAGTGCAGAAGCAAGGCGGTACTGCCGCCTATATTGATGCCGAGAATGCAATGGATCCCAAGTACGCAACTGCTTT
GGGCGTCAATATTGACGAATTATTGCTCTCCCAGCCAGACACAGGCGAACAAGGGCTGGAGATTGCTGATGAACTAGTCG
CGTCTGGTGCCATTGATATTGTGGTGATTGATTCAGTTGCTGCTTTGGTGCCGCGGGCTGAGATTGAGGGCGATATGGGG
GATGCCCATGTTGGCTTGCAAGCCAGATTAATGTCACAGGCGTTACGTAAGTTATCCGGTTCCATCAATAAGACAAAAAC
GATTGCTTTATTCATTAATCAGATTCGTGAGAAAGTCGGGATCATTTTTGGGAGTCCGGAAACGACACCAGGTGGTCGTG
CCTTGAAGTTTTATGCGACTGTTCGGTTAGAGATCCGGCGGTCGGAACAGATCAAGACAGGCGCAGATGTCGTCGGCAAT
CGCACTAAAATCAAAGTGGTCAAGAATAAGGTGGCACCGCCTTTTCGAACAGCAATTGTGGATATCATGTATGGCCAAGG
CATTTCGCAAACTGGCGAACTTGTCGACATGGCCGTTGAGAGAGATATTGTTGAAAAAGCAGGTTCATGGTACGCGTATC
AAGGTGAACGCATCGGCCAAGGTCGCGAAAACGCTAAGACATATCTTGACAACCACGCTGATCTTCAGCAGACGATTAAA
CAACAGGTTCGCGTGGCTTATGGTATGGCATCCGCACCTTGTCCGGAGACGGCTTCAGTCAGTGAAGATCAACCCGAAAT
ACCTCAACCGGCTGAAGTATGA
Similar proteins
Only experimentally validated proteins are listed.