Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   AUF16_RS11605 Genome accession   NZ_CP024590
Coordinates   2340296..2341345 (-) Length   349 a.a.
NCBI ID   WP_016179435.1    Uniprot ID   A0AAV3J3V8
Organism   Enterococcus avium strain FDAARGOS_184     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2335296..2346345
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS11590 (AUF16_11600) - 2336528..2336824 (+) 297 WP_065422868.1 bacteriocin immunity protein -
  AUF16_RS11595 (AUF16_11605) rny 2336954..2338510 (-) 1557 WP_016179436.1 ribonuclease Y -
  AUF16_RS11600 (AUF16_11610) - 2338887..2340203 (+) 1317 WP_102865971.1 ISL3 family transposase -
  AUF16_RS11605 (AUF16_11615) recA 2340296..2341345 (-) 1050 WP_016179435.1 recombinase RecA Machinery gene
  AUF16_RS11610 (AUF16_11620) cinA 2341470..2342717 (-) 1248 WP_048719424.1 competence/damage-inducible protein A Machinery gene
  AUF16_RS11615 (AUF16_11625) pgsA 2342841..2343422 (-) 582 WP_049220178.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AUF16_RS11620 (AUF16_11630) - 2343457..2344320 (-) 864 WP_049220176.1 RodZ domain-containing protein -
  AUF16_RS11625 (AUF16_11635) ymfI 2344447..2345172 (-) 726 WP_016179431.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37532.67 Da        Isoelectric Point: 4.8388

>NTDB_id=254096 AUF16_RS11605 WP_016179435.1 2340296..2341345(-) (recA) [Enterococcus avium strain FDAARGOS_184]
MANDRKAALDAAMKKIEKNYGKGSIMKLGEKVDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKHGGTAAFIDAEHALDPQYAQRLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIIVIDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIAVFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKNGTDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGFGISQEGELLDMAVEQDIVDKSGAWYGYKEDRIGQGRENAKKYLADHPEMMAEVAT
RVRAAYGIGEEGDVTEAEEAGQEELPLDE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=254096 AUF16_RS11605 WP_016179435.1 2340296..2341345(-) (recA) [Enterococcus avium strain FDAARGOS_184]
TTGGCAAATGATCGCAAGGCAGCCTTAGATGCTGCAATGAAGAAGATTGAAAAGAATTATGGTAAAGGTTCGATCATGAA
ATTAGGAGAAAAGGTCGATCAGCAAATCTCAACAATTCCAAGCGGTTCTTTGGCATTGGACGTTGCGTTAGGTGTTGGTG
GATACCCTCGTGGACGAATCATCGAAGTATATGGTCCAGAAAGTTCTGGTAAAACAACGGTTGCACTGCATGCGATTGCA
GAAGTTCAAAAACATGGCGGGACGGCAGCTTTTATTGATGCCGAGCACGCATTGGACCCTCAATACGCACAACGTCTAGG
TGTAAACATTGATGAATTGCTGCTATCACAACCAGATACTGGGGAACAAGGCTTAGAAATTGCAGATGCTTTAGTTTCAA
GTGGCGCAGTCGATATTATCGTTATTGACTCGGTGGCCGCGCTAGTCCCCCGTGCTGAAATCGATGGCGAGATGGGTGAT
GCGCACGTTGGTCTGCAGGCTCGTTTGATGTCACAAGCATTGCGCAAGCTGTCAGGCTCTATCAACAAAACAAAGACTAT
TGCCGTCTTCATTAACCAAATTCGTGAAAAAGTCGGTGTTATGTTTGGTAATCCTGAAACAACGCCTGGTGGACGTGCAT
TGAAGTTCTACGCAACCGTTCGCTTAGAAGTACGTCGTGCGGAGCAATTGAAAAATGGAACGGATATCGTTGGTAATCGT
ACCAAGATCAAAGTCGTTAAGAATAAAGTAGCGCCACCATTCAAGGTAGCTGAAGTTGATATTATGTATGGCTTCGGAAT
CTCGCAAGAAGGCGAATTGTTAGATATGGCTGTGGAACAAGACATCGTCGACAAGAGCGGTGCTTGGTATGGCTATAAAG
AAGATCGGATTGGACAAGGACGCGAAAACGCTAAGAAGTATTTGGCGGATCATCCAGAAATGATGGCAGAAGTTGCGACA
CGTGTACGTGCAGCTTATGGTATCGGTGAAGAAGGCGATGTGACGGAAGCTGAAGAAGCGGGTCAGGAAGAATTGCCTTT
AGATGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

79.202

100

0.797
  recA Bacillus subtilis subsp. subtilis str. 168

77.108

95.129

0.734
  recA Streptococcus pneumoniae D39

68.333

100

0.705
  recA Streptococcus pneumoniae Rx1

68.333

100

0.705
  recA Streptococcus pneumoniae R6

68.333

100

0.705
  recA Streptococcus pneumoniae TIGR4

68.333

100

0.705
  recA Streptococcus mitis NCTC 12261

68.539

100

0.699
  recA Streptococcus mitis SK321

68.539

100

0.699
  recA Streptococcus mutans UA159

66.189

100

0.662
  recA Streptococcus pyogenes NZ131

69.486

94.842

0.659
  recA Lactococcus lactis subsp. cremoris KW2

67.164

95.989

0.645
  recA Ralstonia pseudosolanacearum GMI1000

63.889

92.837

0.593
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.42

98.854

0.587
  recA Glaesserella parasuis strain SC1401

58.12

100

0.585
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

93.696

0.585
  recA Acinetobacter baylyi ADP1

58.166

100

0.582
  recA Neisseria gonorrhoeae MS11

61.094

94.269

0.576
  recA Neisseria gonorrhoeae MS11

61.094

94.269

0.576
  recA Neisseria gonorrhoeae strain FA1090

61.094

94.269

0.576
  recA Pseudomonas stutzeri DSM 10701

61.728

92.837

0.573
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.231

93.123

0.57
  recA Vibrio cholerae strain A1552

61.61

92.55

0.57
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.61

92.55

0.57
  recA Acinetobacter baumannii D1279779

61.3

92.55

0.567
  recA Helicobacter pylori strain NCTC11637

58.967

94.269

0.556
  recA Helicobacter pylori 26695

58.967

94.269

0.556

Multiple sequence alignment