Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB/nlmE   Type   Regulator
Locus tag   DLJ52_RS04565 Genome accession   NZ_CP029559
Coordinates   952797..953570 (-) Length   257 a.a.
NCBI ID   WP_019770708.1    Uniprot ID   -
Organism   Streptococcus sobrinus strain NIDR 6715-15     
Function   transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 947797..958570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DLJ52_RS04540 (DLJ52_04540) - 947978..948913 (+) 936 Protein_845 amidohydrolase family protein -
  DLJ52_RS04545 (DLJ52_04545) - 949030..949556 (+) 527 Protein_846 YbaK/EbsC family protein -
  DLJ52_RS04550 (DLJ52_04550) - 949969..950472 (+) 504 WP_019777342.1 phosphatase PAP2 family protein -
  DLJ52_RS04555 (DLJ52_04555) comE/blpR 950587..951330 (+) 744 WP_109982563.1 response regulator transcription factor Regulator
  DLJ52_RS04560 (DLJ52_04560) - 951333..952679 (+) 1347 WP_002998464.1 GHKL domain-containing protein -
  DLJ52_RS04565 (DLJ52_04565) comB/nlmE 952797..953570 (-) 774 WP_019770708.1 HlyD family efflux transporter periplasmic adaptor subunit Regulator
  DLJ52_RS04570 (DLJ52_04570) comA/nlmT 953583..955730 (-) 2148 WP_021673784.1 peptide cleavage/export ABC transporter Regulator
  DLJ52_RS04575 (DLJ52_04575) - 956044..956238 (+) 195 WP_019771729.1 bacteriocin class II family protein -
  DLJ52_RS04580 (DLJ52_04580) - 956295..956486 (+) 192 WP_019770705.1 Blp family class II bacteriocin -
  DLJ52_RS04585 (DLJ52_04585) - 956514..956699 (+) 186 WP_019770704.1 hypothetical protein -
  DLJ52_RS04590 (DLJ52_04590) - 956949..958105 (-) 1157 Protein_855 IS256 family transposase -
  DLJ52_RS04595 (DLJ52_04595) - 958406..958549 (+) 144 WP_019768643.1 hypothetical protein -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28960.31 Da        Isoelectric Point: 10.0626

>NTDB_id=254096 DLJ52_RS04565 WP_019770708.1 952797..953570(-) (comB/nlmE) [Streptococcus sobrinus strain NIDR 6715-15]
MDKKLLSSSEFYRRRYQNFATLSVIPIALLVIYLIVFSMYATKEIVVTSTGELTPASNVTSIQSISDNAITTNNLRNNKT
VKKGDTLLKYEKTKLDSQTQLYLEETGQAIQEEKAPEVKATQDGILHLEKDYSGQKAIPNGTTIGEIYPNLQKEKAINLT
YYVNSNYIASIKTGQLARVSLKGDNNKNLLLKGKVIAIDKTATTTKEGNVFKVRARIDLEKQEKKYLKFGLQGKVTSIVA
RKTYFDYYKEKLLASFN

Nucleotide


Download         Length: 774 bp        

>NTDB_id=254096 DLJ52_RS04565 WP_019770708.1 952797..953570(-) (comB/nlmE) [Streptococcus sobrinus strain NIDR 6715-15]
ATGGATAAAAAATTACTGAGCAGTTCTGAATTTTACCGCAGGCGCTACCAAAATTTTGCGACCTTGTCGGTTATCCCAAT
AGCTTTACTGGTGATTTATCTTATTGTCTTTTCGATGTATGCGACCAAAGAAATTGTCGTTACCAGCACGGGTGAGTTGA
CACCAGCTTCAAATGTTACTTCTATCCAATCTATCAGTGATAATGCTATCACAACCAATAATTTACGAAACAATAAAACC
GTCAAAAAAGGCGACACCTTACTCAAATACGAAAAAACAAAATTAGATAGCCAAACCCAGCTCTACCTTGAAGAAACTGG
CCAGGCTATTCAAGAGGAAAAAGCTCCAGAAGTCAAGGCGACACAAGACGGCATCCTACATTTAGAAAAAGATTATAGCG
GTCAAAAAGCTATTCCAAACGGCACGACTATCGGGGAAATTTATCCTAATCTTCAAAAGGAGAAAGCTATCAATCTCACT
TACTATGTCAACTCAAACTATATTGCTAGTATTAAGACTGGACAGTTGGCTAGAGTTAGCTTAAAAGGCGATAATAATAA
AAATCTCCTTCTCAAGGGAAAAGTGATTGCAATTGATAAAACAGCAACAACGACAAAAGAGGGCAATGTCTTTAAAGTAA
GGGCTAGAATAGACCTCGAAAAGCAAGAGAAAAAATATCTCAAATTCGGCCTCCAGGGCAAGGTGACTAGTATTGTTGCT
AGGAAGACCTACTTTGATTACTATAAGGAAAAGCTCCTAGCCTCATTCAACTAA

Domains

Predicted by InterProScan.

HlyD family secretion protein ()

(118-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB/nlmE Streptococcus mutans UA159

38.644

100

0.444

Multiple sequence alignment