Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   AUF16_RS11610 Genome accession   NZ_CP024590
Coordinates   2341470..2342717 (-) Length   415 a.a.
NCBI ID   WP_048719424.1    Uniprot ID   A0A2N8PZS0
Organism   Enterococcus avium strain FDAARGOS_184     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2336470..2347717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AUF16_RS11590 (AUF16_11600) - 2336528..2336824 (+) 297 WP_065422868.1 bacteriocin immunity protein -
  AUF16_RS11595 (AUF16_11605) rny 2336954..2338510 (-) 1557 WP_016179436.1 ribonuclease Y -
  AUF16_RS11600 (AUF16_11610) - 2338887..2340203 (+) 1317 WP_102865971.1 ISL3 family transposase -
  AUF16_RS11605 (AUF16_11615) recA 2340296..2341345 (-) 1050 WP_016179435.1 recombinase RecA Machinery gene
  AUF16_RS11610 (AUF16_11620) cinA 2341470..2342717 (-) 1248 WP_048719424.1 competence/damage-inducible protein A Machinery gene
  AUF16_RS11615 (AUF16_11625) pgsA 2342841..2343422 (-) 582 WP_049220178.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  AUF16_RS11620 (AUF16_11630) - 2343457..2344320 (-) 864 WP_049220176.1 RodZ domain-containing protein -
  AUF16_RS11625 (AUF16_11635) ymfI 2344447..2345172 (-) 726 WP_016179431.1 elongation factor P 5-aminopentanone reductase -
  AUF16_RS11630 (AUF16_11640) yfmH 2345201..2346499 (-) 1299 WP_049220174.1 EF-P 5-aminopentanol modification-associated protein YfmH -

Sequence

Protein


Download         Length: 415 a.a.        Molecular weight: 45284.81 Da        Isoelectric Point: 4.5647

>NTDB_id=254097 AUF16_RS11610 WP_048719424.1 2341470..2342717(-) (cinA) [Enterococcus avium strain FDAARGOS_184]
MKAEIIAVGTELLLGQVVNTNATFLSEKLADMGIEVYYHTVVGDNPQRLEELLQLADTRSELIILCGGLGPTDDDLTKNV
LAEHVGVPLVQNQAGLEALNSFFIQRQSTMTPNNLRQIETLQDGIPLPNRTGLAIGCLYKGKKNNYILLPGPPSELKPMF
LEQARPLLEKEFPTTEKLTSRVLRFFGIGESKLVTDLAEMITHQSNPTIAPYAKPNEVTLRITAKTEDEISANALLNQTE
AEIMAKVGEFFYGYGEENSLVEVVVNLLKEKQLSITAAESLTAGEFQATLGTIPGVSEVFPGGFVTYSETTKASFLGINP
MLLESVGVVSEECAKEMAEAALRLAETDFALSFTGVAGPDELEGKPKGTVYIALAQKDGETLISENHFTRDRSYVRHSSV
MKGLDMVRRAILNKS

Nucleotide


Download         Length: 1248 bp        

>NTDB_id=254097 AUF16_RS11610 WP_048719424.1 2341470..2342717(-) (cinA) [Enterococcus avium strain FDAARGOS_184]
ATGAAAGCAGAAATTATTGCCGTGGGCACAGAGCTCTTATTAGGACAAGTCGTGAATACCAATGCAACATTCTTGTCAGA
AAAGCTAGCGGATATGGGAATTGAGGTTTATTATCACACCGTTGTAGGGGATAATCCGCAGCGTTTAGAAGAGTTACTGC
AATTAGCAGATACACGTAGTGAATTGATTATCTTGTGCGGCGGCTTAGGACCAACGGATGACGATTTAACGAAAAATGTT
TTGGCCGAGCACGTCGGAGTGCCATTAGTACAAAATCAAGCAGGATTAGAAGCCCTTAACAGCTTCTTTATCCAACGACA
AAGTACGATGACGCCGAATAATTTACGTCAGATCGAAACATTGCAAGATGGGATTCCGTTACCGAACCGTACTGGTTTAG
CCATTGGTTGTTTATATAAAGGCAAGAAAAACAATTATATCTTATTGCCAGGACCACCAAGCGAATTAAAGCCAATGTTC
TTGGAACAAGCCCGACCATTGTTAGAAAAAGAATTTCCAACAACGGAAAAGCTTACTTCTCGGGTACTGCGTTTCTTCGG
AATCGGAGAATCGAAATTAGTGACCGACTTAGCGGAGATGATTACACACCAGTCTAATCCCACAATCGCACCTTACGCAA
AGCCAAATGAGGTGACTTTGCGGATCACAGCGAAAACAGAGGATGAGATCTCAGCAAATGCTTTATTAAATCAAACAGAA
GCCGAGATCATGGCAAAAGTCGGCGAGTTCTTTTATGGTTATGGAGAAGAGAACAGCTTAGTCGAAGTTGTGGTGAACTT
ACTGAAAGAAAAACAGCTGAGTATCACAGCAGCAGAAAGCTTAACTGCTGGTGAATTTCAAGCGACGTTAGGTACGATTC
CTGGCGTCTCTGAGGTCTTTCCAGGGGGATTTGTCACATATTCCGAGACAACTAAAGCAAGCTTTCTAGGTATCAATCCG
ATGCTACTAGAAAGTGTCGGCGTGGTGAGTGAAGAATGTGCGAAGGAAATGGCAGAAGCAGCTTTGCGTTTAGCAGAAAC
AGATTTTGCTCTGTCCTTTACCGGAGTGGCGGGTCCTGACGAGCTGGAAGGAAAACCTAAGGGAACGGTTTATATTGCGT
TGGCTCAAAAAGATGGTGAGACGTTGATTAGTGAAAATCATTTTACTCGGGATCGTTCGTATGTCCGCCATAGCTCCGTC
ATGAAGGGCTTAGACATGGTACGGCGAGCAATTCTAAACAAAAGTTAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-410)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2N8PZS0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

53.207

100

0.54
  cinA Streptococcus pneumoniae R6

52.969

100

0.537
  cinA Streptococcus pneumoniae D39

52.969

100

0.537
  cinA Streptococcus pneumoniae Rx1

52.969

100

0.537
  cinA Streptococcus mitis NCTC 12261

52.732

100

0.535
  cinA Streptococcus mitis SK321

52.732

100

0.535
  cinA Streptococcus mutans UA159

51.683

100

0.518
  cinA Bacillus subtilis subsp. subtilis str. 168

46.973

99.518

0.467
  cinA Streptococcus suis isolate S10

42.548

100

0.427

Multiple sequence alignment