Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CSE16_RS04825 Genome accession   NZ_CP024123
Coordinates   1042054..1043124 (+) Length   356 a.a.
NCBI ID   WP_099422849.1    Uniprot ID   A0A2D1SQM3
Organism   Solibacillus sp. R5-41     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1037054..1048124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE16_RS04800 (CSE16_04785) - 1037399..1037656 (+) 258 WP_099422844.1 DUF3243 domain-containing protein -
  CSE16_RS04805 (CSE16_04790) - 1037919..1038716 (+) 798 WP_099422845.1 DUF3388 domain-containing protein -
  CSE16_RS04810 (CSE16_04795) - 1038791..1039687 (+) 897 WP_099422846.1 RodZ family helix-turn-helix domain-containing protein -
  CSE16_RS04815 (CSE16_04800) pgsA 1039735..1040313 (+) 579 WP_099422847.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CSE16_RS04820 (CSE16_04805) cinA 1040626..1041894 (+) 1269 WP_099422848.1 competence/damage-inducible protein A Machinery gene
  CSE16_RS04825 (CSE16_04810) recA 1042054..1043124 (+) 1071 WP_099422849.1 recombinase RecA Machinery gene
  CSE16_RS04830 (CSE16_04815) rny 1043454..1045007 (+) 1554 WP_099425751.1 ribonuclease Y -
  CSE16_RS04835 (CSE16_04820) - 1045370..1046134 (+) 765 WP_099422850.1 tyrosine-protein phosphatase -
  CSE16_RS04840 (CSE16_04825) - 1046229..1047137 (+) 909 WP_099422851.1 LCP family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 38703.86 Da        Isoelectric Point: 4.8079

>NTDB_id=252287 CSE16_RS04825 WP_099422849.1 1042054..1043124(+) (recA) [Solibacillus sp. R5-41]
MSDRKTALDMALKQIEKQFGKGSVMKLGESTDRKIETSSSGSIALDTALGVGGYPRGRIVEVYGPESSGKTTVTLHAIAE
IQANGGTAAFIDAEHALDPVYAQKLGVNIDELLLAQPDTGEQALEIAEALVRSGAIDIIVIDSVAALVPKAEIEGEMGDS
HMGLQARLMSQALRKLSGVINKSNTLAIFINQVREKIGVMFGNPETTTGGRALKFYSSIRLEVRRGEAIKQGTDIVGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIVDIGAELDIIQKSGSWYSYNNDRIGQGRENVKQFFKENPAIRDEVAEK
IRQNFGIGELGYTIGAHDHQDKEEEELELDLLKDEE

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=252287 CSE16_RS04825 WP_099422849.1 1042054..1043124(+) (recA) [Solibacillus sp. R5-41]
TTGAGCGATCGTAAAACAGCGTTAGATATGGCGTTAAAACAAATTGAAAAGCAATTCGGTAAAGGCTCTGTGATGAAGTT
AGGGGAATCAACAGACCGCAAAATTGAAACATCTTCTTCAGGCTCTATTGCACTTGATACAGCACTTGGTGTTGGTGGAT
ACCCACGTGGACGTATTGTAGAAGTTTATGGACCTGAATCTTCAGGTAAAACAACCGTAACACTTCACGCCATTGCAGAA
ATTCAAGCAAACGGTGGTACAGCTGCATTTATTGATGCTGAGCACGCATTAGATCCAGTTTATGCACAAAAGCTAGGCGT
TAATATTGATGAATTATTATTAGCACAGCCGGATACAGGAGAGCAGGCACTTGAAATTGCCGAGGCGTTAGTGCGTTCAG
GCGCAATTGATATTATCGTTATTGACTCAGTAGCTGCATTAGTACCTAAAGCGGAAATTGAGGGTGAAATGGGTGACTCG
CACATGGGTCTCCAAGCACGTTTAATGTCTCAAGCGCTACGTAAATTATCAGGTGTTATTAATAAATCAAATACGTTAGC
TATTTTCATTAACCAAGTTCGTGAAAAGATTGGGGTAATGTTCGGAAATCCTGAGACAACAACTGGTGGACGCGCGTTAA
AGTTCTACTCTTCGATTCGTTTAGAAGTTCGTAGAGGTGAAGCTATTAAGCAAGGTACGGATATTGTTGGAAACAAAACA
AAAATTAAAGTTGTAAAAAATAAGGTAGCACCACCATTCCGCACAGCAGAAGTTGATATTATGTACGGTGAAGGGATTTC
AAAAGAAGGAGAAATCGTGGACATTGGTGCAGAATTAGATATTATTCAAAAAAGTGGTTCATGGTATTCTTACAATAATG
ACCGTATTGGCCAAGGCCGTGAGAACGTGAAGCAATTCTTTAAGGAAAATCCAGCAATTCGTGATGAAGTAGCTGAGAAA
ATCCGCCAAAACTTTGGAATTGGTGAGTTAGGCTATACAATTGGCGCTCATGATCACCAAGATAAAGAAGAGGAAGAATT
AGAATTAGACTTATTGAAAGATGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1SQM3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

81.957

91.854

0.753
  recA Latilactobacillus sakei subsp. sakei 23K

71.341

92.135

0.657
  recA Neisseria gonorrhoeae strain FA1090

65.805

97.753

0.643
  recA Neisseria gonorrhoeae MS11

65.805

97.753

0.643
  recA Neisseria gonorrhoeae MS11

65.805

97.753

0.643
  recA Streptococcus mutans UA159

63.788

100

0.643
  recA Streptococcus pyogenes NZ131

64.306

99.157

0.638
  recA Streptococcus pneumoniae R6

63.506

97.753

0.621
  recA Streptococcus pneumoniae D39

63.506

97.753

0.621
  recA Streptococcus pneumoniae Rx1

63.506

97.753

0.621
  recA Streptococcus pneumoniae TIGR4

63.506

97.753

0.621
  recA Acinetobacter baumannii D1279779

62.464

98.034

0.612
  recA Streptococcus mitis NCTC 12261

65.758

92.697

0.61
  recA Acinetobacter baylyi ADP1

62.178

98.034

0.61
  recA Streptococcus mitis SK321

65.152

92.697

0.604
  recA Lactococcus lactis subsp. cremoris KW2

64.242

92.697

0.596
  recA Vibrio cholerae O1 biovar El Tor strain E7946

65.421

90.169

0.59
  recA Vibrio cholerae strain A1552

65.421

90.169

0.59
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.83

92.416

0.59
  recA Ralstonia pseudosolanacearum GMI1000

66.246

89.045

0.59
  recA Glaesserella parasuis strain SC1401

64.596

90.449

0.584
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.234

96.067

0.579
  recA Helicobacter pylori strain NCTC11637

62.195

92.135

0.573
  recA Pseudomonas stutzeri DSM 10701

63.438

89.888

0.57
  recA Helicobacter pylori 26695

61.89

92.135

0.57
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

62.154

91.292

0.567

Multiple sequence alignment