Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CSE16_RS04820 Genome accession   NZ_CP024123
Coordinates   1040626..1041894 (+) Length   422 a.a.
NCBI ID   WP_099422848.1    Uniprot ID   A0A2D1SQU2
Organism   Solibacillus sp. R5-41     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1035626..1046894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSE16_RS04795 (CSE16_04780) ymfI 1036624..1037352 (+) 729 WP_099422843.1 elongation factor P 5-aminopentanone reductase -
  CSE16_RS04800 (CSE16_04785) - 1037399..1037656 (+) 258 WP_099422844.1 DUF3243 domain-containing protein -
  CSE16_RS04805 (CSE16_04790) - 1037919..1038716 (+) 798 WP_099422845.1 DUF3388 domain-containing protein -
  CSE16_RS04810 (CSE16_04795) - 1038791..1039687 (+) 897 WP_099422846.1 RodZ family helix-turn-helix domain-containing protein -
  CSE16_RS04815 (CSE16_04800) pgsA 1039735..1040313 (+) 579 WP_099422847.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CSE16_RS04820 (CSE16_04805) cinA 1040626..1041894 (+) 1269 WP_099422848.1 competence/damage-inducible protein A Machinery gene
  CSE16_RS04825 (CSE16_04810) recA 1042054..1043124 (+) 1071 WP_099422849.1 recombinase RecA Machinery gene
  CSE16_RS04830 (CSE16_04815) rny 1043454..1045007 (+) 1554 WP_099425751.1 ribonuclease Y -
  CSE16_RS04835 (CSE16_04820) - 1045370..1046134 (+) 765 WP_099422850.1 tyrosine-protein phosphatase -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 45780.70 Da        Isoelectric Point: 6.4331

>NTDB_id=252286 CSE16_RS04820 WP_099422848.1 1040626..1041894(+) (cinA) [Solibacillus sp. R5-41]
MNAEVIAVGSELLLGQIANTNAKFISNQLSELGINVFYHTVVGDNANRLVEVIKIAESRADLIIFSGGLGPTKDDLTKEV
IAKHLNTELIMDEVALRSIEAFFAKHQQPMTENNRKQALVLKGCDVLENRHGMAPGMLLKNAKRTYILLPGPPKELEPMF
QFEAKPKLAAKMHDGAVIISHVLRFYGIGEAALEVQVQAILDDQSNPTVAPLASDGEVTLRITAKAENELSAWQLINEKK
QQILALVGDYHYGIDDDSLASKLVELLMDNHLTIAVAESLTAGLFQSELAEVPGVGGTLVGGVVTYTEQAKIEQLGISKA
LLDQHSVVSSECAAAMAVQVKGKFQTNIGVGLTGAAGPTGHGNQPAGTVWVAICIGDEQPLTYQLHLSGSRNTNRLRAVK
FTYSYLMRELVKSGYKRRQMFK

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=252286 CSE16_RS04820 WP_099422848.1 1040626..1041894(+) (cinA) [Solibacillus sp. R5-41]
ATGAATGCAGAAGTTATTGCAGTAGGCTCGGAATTATTGCTAGGTCAAATTGCCAATACGAATGCGAAATTTATTTCAAA
TCAATTATCTGAACTAGGCATTAATGTTTTTTATCATACGGTAGTAGGGGACAATGCGAATCGACTAGTGGAAGTTATTA
AAATTGCAGAAAGTCGTGCGGATTTAATTATTTTTTCTGGTGGTCTTGGTCCGACAAAGGATGATTTAACAAAAGAAGTG
ATTGCAAAGCATTTGAATACCGAATTAATTATGGATGAAGTGGCTCTTCGTTCAATCGAGGCCTTTTTTGCAAAACATCA
ACAACCAATGACTGAAAATAATCGCAAACAGGCACTTGTTTTAAAAGGGTGTGATGTGCTCGAAAATCGTCATGGGATGG
CACCTGGGATGCTGTTAAAAAACGCCAAGCGTACGTATATTTTATTACCTGGACCGCCAAAAGAATTAGAGCCAATGTTC
CAGTTCGAAGCGAAGCCTAAACTAGCAGCGAAAATGCATGATGGTGCAGTCATAATATCACATGTCCTACGTTTTTATGG
TATTGGTGAAGCCGCATTAGAAGTACAAGTACAAGCGATTTTAGATGACCAATCTAATCCAACAGTGGCGCCACTTGCCT
CTGATGGTGAGGTGACGCTTCGTATTACAGCAAAGGCTGAAAATGAGCTAAGCGCTTGGCAATTAATTAACGAGAAAAAA
CAGCAAATCCTAGCGCTTGTCGGGGACTATCATTACGGCATTGATGATGATTCGCTGGCATCAAAATTAGTAGAACTATT
AATGGATAATCACCTGACGATTGCGGTAGCTGAAAGTTTAACAGCAGGTCTATTCCAATCAGAGCTTGCCGAAGTTCCAG
GGGTAGGTGGGACACTTGTTGGTGGTGTTGTTACTTATACAGAGCAGGCGAAAATAGAACAATTAGGCATTTCAAAAGCA
TTACTCGATCAACATAGCGTTGTTAGTAGTGAATGCGCGGCAGCTATGGCAGTACAAGTAAAGGGAAAATTCCAAACGAA
TATTGGTGTAGGTTTGACTGGTGCAGCCGGTCCTACTGGTCATGGCAATCAACCGGCAGGTACAGTATGGGTAGCGATTT
GTATCGGGGATGAACAACCACTCACATATCAATTACACCTTTCTGGCTCGCGCAATACGAATCGACTGCGCGCGGTAAAA
TTTACGTACAGTTATTTGATGCGCGAATTAGTGAAAAGCGGATATAAAAGGCGCCAAATGTTTAAATAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)

Competence-damaged protein (CinA)

(257-409)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2D1SQU2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

50.49

96.682

0.488
  cinA Streptococcus pneumoniae TIGR4

41.33

99.763

0.412
  cinA Streptococcus pneumoniae Rx1

41.33

99.763

0.412
  cinA Streptococcus pneumoniae R6

41.33

99.763

0.412
  cinA Streptococcus pneumoniae D39

41.093

99.763

0.41
  cinA Streptococcus mutans UA159

40.431

99.052

0.4
  cinA Streptococcus mitis NCTC 12261

43.669

91.706

0.4
  cinA Streptococcus mitis SK321

43.636

91.232

0.398

Multiple sequence alignment