Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CCZ27_RS16830 Genome accession   NZ_CP023439
Coordinates   3856142..3857176 (+) Length   344 a.a.
NCBI ID   WP_096450089.1    Uniprot ID   -
Organism   Thauera sp. K11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3851142..3862176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ27_RS16800 (CCZ27_16800) - 3851306..3852310 (+) 1005 WP_096450079.1 peptidase U32 family protein -
  CCZ27_RS16805 (CCZ27_16805) - 3852375..3853271 (+) 897 WP_096450081.1 U32 family peptidase -
  CCZ27_RS16810 (CCZ27_16810) - 3853387..3853926 (+) 540 WP_096450083.1 SCP2 sterol-binding domain-containing protein -
  CCZ27_RS16815 (CCZ27_16815) thiL 3854043..3855002 (+) 960 WP_096450085.1 thiamine-phosphate kinase -
  CCZ27_RS16820 (CCZ27_16820) - 3855041..3855523 (+) 483 WP_198363161.1 phosphatidylglycerophosphatase A -
  CCZ27_RS16825 (CCZ27_16825) - 3855520..3856008 (+) 489 WP_096450087.1 CinA family protein -
  CCZ27_RS16830 (CCZ27_16830) recA 3856142..3857176 (+) 1035 WP_096450089.1 recombinase RecA Machinery gene
  CCZ27_RS16835 (CCZ27_16835) recX 3857200..3857649 (+) 450 WP_096450091.1 recombination regulator RecX -
  CCZ27_RS16840 (CCZ27_16840) lptB 3857636..3858358 (+) 723 WP_096450093.1 LPS export ABC transporter ATP-binding protein -
  CCZ27_RS16845 (CCZ27_16845) rpoN/rpoN1 3858372..3859826 (+) 1455 WP_096450095.1 RNA polymerase factor sigma-54 Machinery gene
  CCZ27_RS16850 (CCZ27_16850) raiA 3859844..3860167 (+) 324 WP_096450097.1 ribosome-associated translation inhibitor RaiA -
  CCZ27_RS16855 (CCZ27_16855) ptsN 3860299..3860784 (+) 486 WP_096450099.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CCZ27_RS16860 (CCZ27_16860) hprK 3860753..3861712 (+) 960 WP_096450101.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36850.34 Da        Isoelectric Point: 5.5476

>NTDB_id=247168 CCZ27_RS16830 WP_096450089.1 3856142..3857176(+) (recA) [Thauera sp. K11]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVVYAEKLGVNIEDLLISQPDTGEQALEIADMLVRSGGIDIIVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTASIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGTIKKGDEVIGS
ETRVKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVEHKIVDKSGAWYAYNGDKIGQGKDNSREFLRANPALAREIE
NKVRVAVGLPEMQPVAAVAATAST

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=247168 CCZ27_RS16830 WP_096450089.1 3856142..3857176(+) (recA) [Thauera sp. K11]
ATGGACGACAACAAGGCCAAGGCGCTCGCCGCCGCGCTCTCCCAGATCGAGAAGCAGTTCGGCAAGGGTTCGATCATGCG
CATGGGCGACGGCAACGTCGAGCGCGACATCCAGACCGTTTCCACCGGCTCGCTCGGGCTCGACATCGCGCTCGGCCTCG
GCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGCCCCGAATCCTCCGGCAAGACCACGCTGACGCTGCAGGTCATC
GCCGAGATGCAGAAGCTCGGCGGCACCGCCGCCTTCATCGACGCCGAGCATGCGCTCGACGTCGTCTATGCCGAAAAGCT
CGGCGTCAACATCGAGGACCTGCTGATCTCGCAGCCCGACACCGGCGAACAGGCGCTCGAGATCGCCGACATGCTGGTAC
GCTCGGGCGGCATCGACATCATCGTCATCGACTCGGTCGCCGCGCTCACGCCCAAGGCTGAGATCGAGGGCGAGATGGGC
GACCAGTTGCCCGGCCTGCAGGCCCGCCTGATGTCGCAGGCCCTGCGCAAGCTCACCGCCAGCATCAAGCGCACCAACAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAGCCCCGAGACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGCATGGACATCCGCCGCACCGGCACGATCAAGAAGGGCGACGAGGTGATCGGCTCG
GAAACCCGCGTGAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCAAGGAGGCGCACTTCGACATCCTGTACGGCGAGGG
CATCTCGCGCGAAGGCGAGATCATCGACCTCGGCGTGGAACACAAGATCGTCGACAAGTCCGGCGCCTGGTATGCCTACA
ACGGCGACAAGATCGGCCAGGGCAAGGACAACTCGCGCGAGTTCCTGCGCGCCAACCCGGCGCTGGCGCGCGAGATCGAG
AACAAGGTGCGCGTCGCGGTCGGCCTGCCCGAGATGCAGCCGGTCGCGGCCGTGGCCGCGACTGCCTCCACCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.812

93.023

0.77
  recA Vibrio cholerae strain A1552

70.554

99.709

0.703
  recA Vibrio cholerae O1 biovar El Tor strain E7946

70.554

99.709

0.703
  recA Pseudomonas stutzeri DSM 10701

74.383

94.186

0.701
  recA Neisseria gonorrhoeae strain FA1090

72.34

95.64

0.692
  recA Neisseria gonorrhoeae MS11

72.34

95.64

0.692
  recA Neisseria gonorrhoeae MS11

72.34

95.64

0.692
  recA Acinetobacter baylyi ADP1

73.148

94.186

0.689
  recA Acinetobacter baumannii D1279779

72.222

94.186

0.68
  recA Glaesserella parasuis strain SC1401

68.035

99.128

0.674
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

67.073

95.349

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.165

96.802

0.631
  recA Helicobacter pylori 26695

64.458

96.512

0.622
  recA Helicobacter pylori strain NCTC11637

64.458

96.512

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

64.742

95.64

0.619
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

95.93

0.599
  recA Streptococcus pyogenes NZ131

59.13

100

0.593
  recA Streptococcus mutans UA159

60.661

96.802

0.587
  recA Lactococcus lactis subsp. cremoris KW2

59.88

97.093

0.581
  recA Streptococcus mitis NCTC 12261

59.226

97.674

0.578
  recA Streptococcus pneumoniae Rx1

58.929

97.674

0.576
  recA Streptococcus pneumoniae D39

58.929

97.674

0.576
  recA Streptococcus pneumoniae R6

58.929

97.674

0.576
  recA Streptococcus pneumoniae TIGR4

58.929

97.674

0.576
  recA Streptococcus mitis SK321

60.182

95.64

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.642

94.186

0.552

Multiple sequence alignment