Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   CCZ27_RS16845 Genome accession   NZ_CP023439
Coordinates   3858372..3859826 (+) Length   484 a.a.
NCBI ID   WP_096450095.1    Uniprot ID   -
Organism   Thauera sp. K11     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3853372..3864826
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CCZ27_RS16810 (CCZ27_16810) - 3853387..3853926 (+) 540 WP_096450083.1 SCP2 sterol-binding domain-containing protein -
  CCZ27_RS16815 (CCZ27_16815) thiL 3854043..3855002 (+) 960 WP_096450085.1 thiamine-phosphate kinase -
  CCZ27_RS16820 (CCZ27_16820) - 3855041..3855523 (+) 483 WP_198363161.1 phosphatidylglycerophosphatase A -
  CCZ27_RS16825 (CCZ27_16825) - 3855520..3856008 (+) 489 WP_096450087.1 CinA family protein -
  CCZ27_RS16830 (CCZ27_16830) recA 3856142..3857176 (+) 1035 WP_096450089.1 recombinase RecA Machinery gene
  CCZ27_RS16835 (CCZ27_16835) recX 3857200..3857649 (+) 450 WP_096450091.1 recombination regulator RecX -
  CCZ27_RS16840 (CCZ27_16840) lptB 3857636..3858358 (+) 723 WP_096450093.1 LPS export ABC transporter ATP-binding protein -
  CCZ27_RS16845 (CCZ27_16845) rpoN/rpoN1 3858372..3859826 (+) 1455 WP_096450095.1 RNA polymerase factor sigma-54 Machinery gene
  CCZ27_RS16850 (CCZ27_16850) raiA 3859844..3860167 (+) 324 WP_096450097.1 ribosome-associated translation inhibitor RaiA -
  CCZ27_RS16855 (CCZ27_16855) ptsN 3860299..3860784 (+) 486 WP_096450099.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CCZ27_RS16860 (CCZ27_16860) hprK 3860753..3861712 (+) 960 WP_096450101.1 HPr(Ser) kinase/phosphatase -
  CCZ27_RS16865 (CCZ27_16865) ilvA 3861781..3863298 (+) 1518 WP_096450103.1 threonine ammonia-lyase, biosynthetic -
  CCZ27_RS16870 (CCZ27_16870) - 3863308..3863853 (-) 546 WP_096450105.1 5-formyltetrahydrofolate cyclo-ligase -

Sequence

Protein


Download         Length: 484 a.a.        Molecular weight: 53927.74 Da        Isoelectric Point: 4.9638

>NTDB_id=247169 CCZ27_RS16845 WP_096450095.1 3858372..3859826(+) (rpoN/rpoN1) [Thauera sp. K11]
MKPSLQLKLSQHLTLTPQLQQSIKLLQLSTLELNQEIERFLLENPMLEREEGDGSEFAPPPPAPGSTTAATDRGNEASDS
REGGDTRSEGESAAGLDEGMDWSSVGNGSPSNRDDDDVDYQEFQAAGISLRDHLDLQVALSPLSDRDRALVRFIIEALDD
DGYLHQTLEDLLELLPAELEIDLDELTIALRHVQNLEPAGIGARTPQECLSLQLRAQPPSPDRNLALEIVDRHLELLAER
NFAKLKRLTGCDDDALRAAQALIGRLDPHPGSQHSAEETRYVLPDVVVRKVRNRWTVSLNPEAMPRLRINQLYASILQQH
RGQGGGLTGQLQEARWLIKNVQQRFDTILRVSQAIVDQQRQFFDHGDVAMRPLTLREIADQLELHESTVSRVTTQKYMAT
PRGVFELKYFFGSHVSTDTGGAASSTAIRALIRQLVEAEDRKKPLSDARIADLLGQQGIVVARRTIAKYRESLNIPPVSL
RKTL

Nucleotide


Download         Length: 1455 bp        

>NTDB_id=247169 CCZ27_RS16845 WP_096450095.1 3858372..3859826(+) (rpoN/rpoN1) [Thauera sp. K11]
ATGAAACCCAGTCTCCAGCTCAAGCTTTCCCAGCACCTGACGCTCACGCCGCAGTTGCAGCAGTCGATCAAGCTGCTGCA
GTTGTCCACGCTCGAGCTCAACCAGGAGATCGAGCGCTTCCTGCTCGAGAACCCCATGCTGGAGCGCGAGGAAGGCGACG
GCAGCGAGTTCGCACCGCCTCCGCCGGCCCCCGGCAGCACCACGGCGGCAACCGACCGCGGCAACGAGGCATCCGACAGC
CGCGAAGGCGGCGACACGCGCAGCGAGGGCGAGTCCGCCGCCGGCCTCGACGAAGGCATGGACTGGTCCAGCGTCGGCAA
CGGCAGCCCGTCCAACCGCGACGACGACGACGTCGATTACCAGGAATTCCAGGCCGCCGGCATCTCGCTGCGCGACCACC
TCGACCTGCAGGTGGCGCTGTCGCCGCTCAGCGACCGCGACCGCGCGCTCGTGCGCTTCATCATCGAGGCGCTCGACGAC
GACGGCTACCTGCACCAGACGCTGGAGGATCTGCTGGAGCTGCTGCCGGCCGAACTCGAGATCGATCTCGACGAACTCAC
GATCGCCCTGCGCCACGTGCAGAACCTGGAACCGGCCGGCATCGGCGCGCGCACGCCGCAGGAATGCCTGTCGCTGCAGT
TGCGCGCCCAGCCGCCCTCGCCCGACCGCAACCTCGCGCTGGAGATCGTCGACAGGCACCTCGAACTGCTCGCCGAGCGC
AACTTCGCCAAGCTCAAGCGGCTCACCGGCTGCGACGACGACGCCCTGCGCGCCGCCCAGGCGCTGATCGGCCGGCTCGA
CCCCCACCCCGGCTCGCAGCACTCCGCCGAGGAAACGCGCTACGTGCTGCCCGACGTGGTGGTGCGCAAGGTGCGCAACC
GCTGGACGGTGTCGCTCAACCCGGAGGCGATGCCGCGCCTGCGCATCAACCAGCTCTACGCCAGCATCCTGCAGCAGCAC
CGCGGCCAGGGCGGCGGACTGACGGGCCAGTTGCAGGAGGCGCGCTGGCTGATCAAGAACGTCCAGCAGCGCTTCGACAC
CATCCTGCGCGTGTCACAGGCGATCGTTGACCAGCAGCGGCAGTTCTTCGATCATGGGGACGTGGCAATGCGGCCACTCA
CCCTCCGGGAGATCGCGGACCAGCTCGAGCTGCACGAATCCACCGTTTCGCGCGTGACGACGCAGAAGTACATGGCGACG
CCGCGCGGTGTGTTCGAACTCAAGTATTTCTTCGGCAGTCACGTCTCCACCGACACCGGCGGTGCGGCATCCTCCACTGC
GATTCGCGCGCTGATTCGCCAGTTGGTGGAGGCCGAGGACAGGAAAAAACCCTTGTCGGACGCCAGGATTGCCGATCTAT
TGGGCCAGCAGGGTATCGTGGTCGCACGGCGGACGATCGCCAAGTATCGCGAATCCCTCAATATCCCGCCGGTCAGTCTG
CGCAAAACGCTTTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)

Sigma-54 factor, core binding domain (Sigma54_CBD)

(120-313)

Sigma-54, DNA binding domain (Sigma54_DBD)

(329-482)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

57.171

100

0.601

Multiple sequence alignment