Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CK496_RS11820 Genome accession   NZ_CP023074
Coordinates   2507626..2508672 (-) Length   348 a.a.
NCBI ID   WP_067484637.1    Uniprot ID   A0AA91PQ71
Organism   Enterococcus thailandicus strain a523     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2502626..2513672
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK496_RS11810 (CK496_11810) proC 2504716..2505531 (+) 816 WP_067484643.1 pyrroline-5-carboxylate reductase -
  CK496_RS11815 (CK496_11815) rny 2505574..2507130 (-) 1557 WP_067484639.1 ribonuclease Y -
  CK496_RS11820 (CK496_11820) recA 2507626..2508672 (-) 1047 WP_067484637.1 recombinase RecA Machinery gene
  CK496_RS11825 (CK496_11825) cinA 2508777..2510021 (-) 1245 WP_075491445.1 competence/damage-inducible protein A Machinery gene
  CK496_RS11830 (CK496_11830) pgsA 2510119..2510697 (-) 579 WP_067484631.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CK496_RS11835 (CK496_11835) - 2510852..2511736 (-) 885 WP_071869015.1 RodZ domain-containing protein -
  CK496_RS11840 (CK496_11840) - 2511759..2512484 (-) 726 WP_071869014.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 37534.84 Da        Isoelectric Point: 4.7810

>NTDB_id=244730 CK496_RS11820 WP_067484637.1 2507626..2508672(-) (recA) [Enterococcus thailandicus strain a523]
MADDRKAALDAALKKIEKSYGKGSIMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIIEVYGPESSGKTTVALHAIA
EVQKNGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAVDIVVVDSVAALVPRAEIDGEMGD
AHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPEVTPGGRALKFYATIRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKVAEVDVMYGLGISQEGELLDMAVEKDIVDKSGAWYSYKEDRIGQGRENAKIYMSTHPEMMNEISG
LVREAYGIGEGIETEEKPEQEELPLTEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=244730 CK496_RS11820 WP_067484637.1 2507626..2508672(-) (recA) [Enterococcus thailandicus strain a523]
TTGGCAGATGATCGTAAAGCGGCCTTAGATGCTGCGTTAAAGAAAATTGAAAAAAGTTATGGTAAAGGTTCTATTATGAA
ATTGGGCGAGAAAATCGACCAACAAATCTCAACAATTCCAAGTGGTTCACTTGCTTTAGATGTAGCATTGGGAGTAGGTG
GTTATCCACGAGGAAGAATCATCGAAGTTTACGGGCCAGAAAGTTCTGGTAAAACAACGGTTGCACTTCATGCAATTGCC
GAAGTACAAAAAAATGGTGGGACAGCAGCCTTTATTGATGCTGAACACGCATTGGATCCTCAATATGCCCAAAAATTAGG
CGTTAATATCGATGAATTGTTGTTATCACAACCAGATACAGGTGAACAAGGATTAGAGATTGCTGATGCATTGGTTTCAA
GTGGTGCAGTAGATATCGTTGTTGTCGATTCAGTAGCAGCGTTAGTTCCACGAGCAGAAATTGATGGTGAAATGGGTGAT
GCTCACGTTGGATTACAAGCTCGTTTGATGTCCCAAGCTTTGCGTAAATTATCAGGTTCAATTAATAAAACAAAAACAAT
TGCGATTTTTATCAACCAAATTCGTGAAAAAGTAGGCGTAATGTTTGGTAACCCAGAAGTAACACCTGGGGGACGTGCAT
TGAAGTTCTATGCAACGATTCGTTTAGAAGTACGTCGTGCAGAACAATTGAAACAAGGGACAGATATTGTCGGAAACCGT
ACGAAAATTAAGGTAGTTAAAAACAAAGTTGCACCACCATTTAAAGTAGCAGAAGTTGATGTAATGTATGGACTAGGAAT
CTCACAAGAGGGAGAACTACTTGATATGGCGGTAGAAAAAGATATCGTTGATAAAAGTGGTGCTTGGTATTCATATAAAG
AAGATCGTATCGGCCAAGGGCGCGAAAATGCAAAAATTTATATGTCTACTCACCCAGAAATGATGAATGAAATTTCTGGC
TTGGTTCGCGAAGCTTATGGAATTGGTGAAGGTATTGAAACAGAGGAAAAACCTGAACAGGAAGAATTACCTTTAACAGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

78.613

99.425

0.782
  recA Bacillus subtilis subsp. subtilis str. 168

79.692

93.391

0.744
  recA Streptococcus mitis SK321

69.298

98.276

0.681
  recA Streptococcus mitis NCTC 12261

69.298

98.276

0.681
  recA Streptococcus pneumoniae R6

70.118

97.126

0.681
  recA Streptococcus pneumoniae Rx1

70.118

97.126

0.681
  recA Streptococcus pneumoniae D39

70.118

97.126

0.681
  recA Streptococcus pneumoniae TIGR4

70.118

97.126

0.681
  recA Streptococcus mutans UA159

67.052

99.425

0.667
  recA Streptococcus pyogenes NZ131

69.789

95.115

0.664
  recA Lactococcus lactis subsp. cremoris KW2

67.477

94.54

0.638
  recA Neisseria gonorrhoeae strain FA1090

60.632

100

0.606
  recA Neisseria gonorrhoeae MS11

60.632

100

0.606
  recA Neisseria gonorrhoeae MS11

60.632

100

0.606
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.933

98.563

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.11

94.253

0.595
  recA Acinetobacter baumannii D1279779

59.71

99.138

0.592
  recA Acinetobacter baylyi ADP1

59.012

98.851

0.583
  recA Ralstonia pseudosolanacearum GMI1000

63.898

89.943

0.575
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.42

93.103

0.572
  recA Vibrio cholerae strain A1552

61.42

93.103

0.572
  recA Helicobacter pylori 26695

59.517

95.115

0.566
  recA Helicobacter pylori strain NCTC11637

59.517

95.115

0.566
  recA Pseudomonas stutzeri DSM 10701

60.991

92.816

0.566
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.635

91.379

0.563
  recA Glaesserella parasuis strain SC1401

60.436

92.241

0.557

Multiple sequence alignment