Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CK496_RS11825 Genome accession   NZ_CP023074
Coordinates   2508777..2510021 (-) Length   414 a.a.
NCBI ID   WP_075491445.1    Uniprot ID   A0AA91PQ18
Organism   Enterococcus thailandicus strain a523     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2503777..2515021
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CK496_RS11810 (CK496_11810) proC 2504716..2505531 (+) 816 WP_067484643.1 pyrroline-5-carboxylate reductase -
  CK496_RS11815 (CK496_11815) rny 2505574..2507130 (-) 1557 WP_067484639.1 ribonuclease Y -
  CK496_RS11820 (CK496_11820) recA 2507626..2508672 (-) 1047 WP_067484637.1 recombinase RecA Machinery gene
  CK496_RS11825 (CK496_11825) cinA 2508777..2510021 (-) 1245 WP_075491445.1 competence/damage-inducible protein A Machinery gene
  CK496_RS11830 (CK496_11830) pgsA 2510119..2510697 (-) 579 WP_067484631.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CK496_RS11835 (CK496_11835) - 2510852..2511736 (-) 885 WP_071869015.1 RodZ domain-containing protein -
  CK496_RS11840 (CK496_11840) - 2511759..2512484 (-) 726 WP_071869014.1 SDR family oxidoreductase -
  CK496_RS11845 (CK496_11845) - 2512486..2513778 (-) 1293 WP_067484618.1 pitrilysin family protein -

Sequence

Protein


Download         Length: 414 a.a.        Molecular weight: 45615.23 Da        Isoelectric Point: 4.9732

>NTDB_id=244731 CK496_RS11825 WP_075491445.1 2508777..2510021(-) (cinA) [Enterococcus thailandicus strain a523]
MKAEIIAVGTELLLGQVVNTNATFLAEQLADLGIEVYYQTVVGDNKQRLDELIGLAESRSELIILCGGLGPTEDDLTKEV
TADHLGKGLVQDREAYQKLLEFFETTKRKMTANNLQQSQTIEGGIVLPNRTGLAVGTFIQEESHAYILLPGPPSELKPMF
IEQVRPLLIEKFPSKEKLISRVLRFYGIGESRLVTELAELISTQINPTIAPYAKPNEVTLRLTVKTNDIHAGNQALLALE
EKIQERVGEYFYGYGDDNSLEKVVVDLLKERGKTVTAAESLTAGEFQATLGKLSGVSEVFPGGFVTYSEGTKADFLNIDP
QFLEKYGTVSQECAEKMAEQARKLAKTDYAVSFTGVAGPGMLENQAVGTVWIAVASAEEVSATKFQFTRGREAIRRNSVM
EGLNMLRKRILRKK

Nucleotide


Download         Length: 1245 bp        

>NTDB_id=244731 CK496_RS11825 WP_075491445.1 2508777..2510021(-) (cinA) [Enterococcus thailandicus strain a523]
ATGAAAGCAGAGATTATTGCAGTAGGAACAGAGCTACTTCTTGGTCAAGTGGTCAATACAAACGCAACTTTTTTGGCTGA
GCAGTTAGCAGATCTTGGTATTGAAGTTTACTATCAGACAGTTGTTGGGGATAACAAACAAAGACTAGATGAGTTGATAG
GCTTAGCAGAGTCACGAAGCGAGTTAATTATTTTGTGTGGTGGGTTAGGTCCTACAGAGGATGACTTAACCAAAGAAGTA
ACCGCTGACCATTTGGGTAAAGGGTTGGTTCAAGACAGAGAAGCCTATCAAAAATTATTAGAGTTTTTTGAAACAACCAA
GCGTAAAATGACTGCGAATAATTTGCAACAGTCACAAACTATTGAAGGAGGTATTGTTTTACCAAATCGTACAGGGCTAG
CTGTTGGGACATTTATCCAAGAAGAATCTCATGCGTATATCCTACTCCCTGGGCCACCAAGTGAACTGAAACCAATGTTC
ATTGAGCAAGTGCGTCCATTATTGATCGAAAAATTTCCTTCGAAAGAAAAATTAATTTCACGCGTCTTACGTTTTTATGG
CATTGGTGAATCACGATTAGTTACAGAACTAGCCGAACTAATCTCAACACAAATTAATCCGACGATTGCACCTTATGCGA
AACCAAATGAAGTTACCTTACGTTTAACGGTTAAAACCAATGATATTCATGCCGGTAATCAAGCATTGCTTGCACTGGAA
GAAAAAATTCAGGAACGGGTGGGCGAATATTTTTATGGCTATGGAGATGATAATTCGTTAGAAAAAGTTGTGGTCGATTT
GCTAAAAGAAAGAGGGAAAACAGTAACTGCTGCTGAAAGTTTAACTGCAGGAGAGTTTCAAGCAACATTAGGAAAACTTT
CCGGTGTTTCTGAAGTTTTTCCTGGAGGATTCGTGACATACTCAGAAGGAACAAAAGCCGATTTTTTAAACATCGATCCG
CAATTTCTGGAAAAATATGGAACTGTGAGTCAAGAGTGTGCCGAAAAAATGGCTGAGCAAGCAAGAAAGTTAGCGAAAAC
GGACTATGCGGTATCGTTTACAGGCGTTGCAGGACCAGGTATGCTTGAAAACCAAGCGGTCGGAACAGTTTGGATTGCTG
TAGCTTCAGCTGAGGAAGTAAGTGCAACTAAGTTTCAATTTACGCGCGGACGTGAAGCAATTCGTCGCAACTCGGTAATG
GAAGGTCTGAATATGTTACGTAAGCGGATTTTAAGAAAAAAATAA

Domains

Predicted by InterproScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Competence-damaged protein (CinA)

(258-409)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus pneumoniae TIGR4

52.381

100

0.531
  cinA Streptococcus pneumoniae D39

52.143

100

0.529
  cinA Streptococcus pneumoniae Rx1

52.143

100

0.529
  cinA Streptococcus pneumoniae R6

52.143

100

0.529
  cinA Streptococcus mutans UA159

51.914

100

0.524
  cinA Streptococcus mitis SK321

51.429

100

0.522
  cinA Streptococcus mitis NCTC 12261

51.19

100

0.519
  cinA Bacillus subtilis subsp. subtilis str. 168

48.058

99.517

0.478
  cinA Streptococcus suis isolate S10

41.546

100

0.415

Multiple sequence alignment