Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CKF48_RS00240 Genome accession   NZ_CP022983
Coordinates   47447..48487 (-) Length   346 a.a.
NCBI ID   WP_095369461.1    Uniprot ID   -
Organism   Cytobacillus kochii strain BDGP4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 42447..53487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKF48_RS00220 (CKF48_00220) - 43029..43955 (-) 927 WP_095369457.1 dipeptidase -
  CKF48_RS00225 (CKF48_00225) spoVS 44089..44349 (-) 261 WP_095369458.1 stage V sporulation protein SpoVS -
  CKF48_RS00230 (CKF48_00230) - 44502..45299 (-) 798 WP_095369459.1 TIGR00282 family metallophosphoesterase -
  CKF48_RS00235 (CKF48_00235) rny 45423..46982 (-) 1560 WP_095369460.1 ribonuclease Y -
  CKF48_RS00240 (CKF48_00240) recA 47447..48487 (-) 1041 WP_095369461.1 recombinase RecA Machinery gene
  CKF48_RS00245 (CKF48_00245) cinA 48858..50090 (-) 1233 WP_095369462.1 competence/damage-inducible protein A Machinery gene
  CKF48_RS00250 (CKF48_00250) pgsA 50107..50685 (-) 579 WP_095369463.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CKF48_RS00255 (CKF48_00255) - 50845..51735 (-) 891 WP_095369464.1 helix-turn-helix domain-containing protein -
  CKF48_RS00260 (CKF48_00260) - 51748..52545 (-) 798 WP_095369465.1 DUF3388 domain-containing protein -
  CKF48_RS00265 (CKF48_00265) - 52749..52994 (-) 246 WP_095369466.1 DUF3243 domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 37675.75 Da        Isoelectric Point: 4.7255

>NTDB_id=243791 CKF48_RS00240 WP_095369461.1 47447..48487(-) (recA) [Cytobacillus kochii strain BDGP4]
MSDRQAALDMALKQIEKQFGKGSIMKLGEQAERKISTIPSGSLALDTALGVGGYPRGRIIEIYGPESSGKTTVALHAIAE
VQAAGGQAAFIDAEHALDPVYAQNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDILVIDSVAALVPKAEIEGEMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSTVRLEVRRAEALKQGNEIVGNKT
KIKIVKNKVAPPFRVAEVDIMYGEGVSKEGEIIDLGSEIDIVQKSGSWYSYNDERLGQGRENAKQFLKENTEIRLQIQEK
IREYYGLDVDKSSNSDDEQEEFELID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=243791 CKF48_RS00240 WP_095369461.1 47447..48487(-) (recA) [Cytobacillus kochii strain BDGP4]
ATGAGCGATCGTCAAGCAGCCTTAGATATGGCGTTGAAACAAATAGAAAAGCAGTTTGGTAAAGGCTCGATTATGAAGTT
AGGAGAACAAGCAGAGCGTAAAATATCCACTATTCCAAGTGGTTCATTAGCTCTAGATACCGCTTTAGGAGTAGGTGGAT
ATCCGAGAGGACGTATCATCGAAATTTACGGGCCTGAAAGTTCGGGTAAAACAACTGTTGCTCTGCACGCCATTGCTGAA
GTACAAGCAGCAGGTGGACAAGCAGCATTTATCGATGCAGAGCATGCACTTGACCCTGTATATGCTCAAAACCTTGGGGT
AAATATTGATGAGCTTCTTTTATCACAACCAGATACAGGGGAACAAGCCCTTGAAATAGCTGAAGCTTTAGTTAGAAGTG
GTGCCGTTGATATTTTAGTTATTGACTCTGTAGCTGCTTTAGTACCAAAGGCAGAAATTGAAGGGGAAATGGGAGATTCT
CACGTCGGTCTTCAAGCAAGATTAATGTCGCAGGCACTAAGGAAACTATCTGGTGCGATTAATAAATCCAAAACGATTGC
GATTTTCATTAACCAAATTCGTGAAAAAGTAGGCGTTATGTTCGGTAACCCTGAAACAACACCAGGTGGTCGTGCATTAA
AATTCTACTCAACGGTACGTTTAGAAGTGCGTAGAGCAGAAGCTTTGAAGCAAGGCAATGAGATTGTCGGTAATAAAACA
AAAATTAAAATTGTAAAAAATAAAGTAGCTCCGCCTTTTAGAGTAGCGGAAGTTGATATCATGTATGGTGAAGGTGTATC
AAAAGAAGGGGAAATTATTGATCTCGGATCAGAGATTGATATTGTACAAAAAAGTGGTTCTTGGTACTCCTATAATGATG
AACGTTTAGGTCAAGGAAGAGAAAATGCAAAGCAATTTCTTAAAGAGAATACGGAAATTCGTTTGCAAATTCAAGAGAAA
ATCCGGGAGTACTATGGTTTAGACGTAGATAAATCTTCTAACAGCGATGATGAACAAGAGGAATTCGAACTAATCGATTA
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

89.939

94.798

0.853
  recA Latilactobacillus sakei subsp. sakei 23K

71.802

99.422

0.714
  recA Streptococcus pneumoniae Rx1

66.859

100

0.671
  recA Streptococcus pneumoniae D39

66.859

100

0.671
  recA Streptococcus pneumoniae R6

66.859

100

0.671
  recA Streptococcus pneumoniae TIGR4

66.859

100

0.671
  recA Streptococcus mitis NCTC 12261

65.903

100

0.665
  recA Streptococcus mitis SK321

65.616

100

0.662
  recA Streptococcus mutans UA159

68.693

95.087

0.653
  recA Streptococcus pyogenes NZ131

67.988

94.798

0.645
  recA Lactococcus lactis subsp. cremoris KW2

66.97

95.376

0.639
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

63.529

98.266

0.624
  recA Neisseria gonorrhoeae strain FA1090

63.422

97.977

0.621
  recA Neisseria gonorrhoeae MS11

63.422

97.977

0.621
  recA Neisseria gonorrhoeae MS11

63.422

97.977

0.621
  recA Vibrio cholerae strain A1552

63.05

98.555

0.621
  recA Vibrio cholerae O1 biovar El Tor strain E7946

63.05

98.555

0.621
  recA Helicobacter pylori strain NCTC11637

61.696

98.844

0.61
  recA Ralstonia pseudosolanacearum GMI1000

67.412

90.462

0.61
  recA Helicobacter pylori 26695

61.404

98.844

0.607
  recA Glaesserella parasuis strain SC1401

60.405

100

0.604
  recA Acinetobacter baylyi ADP1

59.42

99.711

0.592
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

62.385

94.509

0.59
  recA Pseudomonas stutzeri DSM 10701

62.813

92.486

0.581
  recA Acinetobacter baumannii D1279779

61.994

92.775

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.938

92.486

0.564

Multiple sequence alignment