Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CKF48_RS00245 Genome accession   NZ_CP022983
Coordinates   48858..50090 (-) Length   410 a.a.
NCBI ID   WP_095369462.1    Uniprot ID   A0A248TCH7
Organism   Cytobacillus kochii strain BDGP4     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 43858..55090
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CKF48_RS00225 (CKF48_00225) spoVS 44089..44349 (-) 261 WP_095369458.1 stage V sporulation protein SpoVS -
  CKF48_RS00230 (CKF48_00230) - 44502..45299 (-) 798 WP_095369459.1 TIGR00282 family metallophosphoesterase -
  CKF48_RS00235 (CKF48_00235) rny 45423..46982 (-) 1560 WP_095369460.1 ribonuclease Y -
  CKF48_RS00240 (CKF48_00240) recA 47447..48487 (-) 1041 WP_095369461.1 recombinase RecA Machinery gene
  CKF48_RS00245 (CKF48_00245) cinA 48858..50090 (-) 1233 WP_095369462.1 competence/damage-inducible protein A Machinery gene
  CKF48_RS00250 (CKF48_00250) pgsA 50107..50685 (-) 579 WP_095369463.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CKF48_RS00255 (CKF48_00255) - 50845..51735 (-) 891 WP_095369464.1 helix-turn-helix domain-containing protein -
  CKF48_RS00260 (CKF48_00260) - 51748..52545 (-) 798 WP_095369465.1 DUF3388 domain-containing protein -
  CKF48_RS00265 (CKF48_00265) - 52749..52994 (-) 246 WP_095369466.1 DUF3243 domain-containing protein -
  CKF48_RS00270 (CKF48_00270) ymfI 53107..53829 (-) 723 WP_095373472.1 elongation factor P 5-aminopentanone reductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 44696.06 Da        Isoelectric Point: 4.8649

>NTDB_id=243792 CKF48_RS00245 WP_095369462.1 48858..50090(-) (cinA) [Cytobacillus kochii strain BDGP4]
MNAEIIAVGSELLLGQINNTNAKFLSQQLADLGVNVFYHTVVGDNAGRLESAIKIAENRAELIIFTGGLGPTKDDLTKET
IAKHLQTNLVMDDTALASIEEYFKRTNRPMTENNRKQALVLSGAKVLPNDYGMAPGMFYQTENKQYMLLPGPPKEMEPMF
LKYGFSAIKSQSVEEAVISSRVLRFFGIGEAMLEAEIEDILDNQTNPTIAPLAGDHEVTLRLTAKHHNLDAALTLLEEKE
KEIMAVVGDYFYGYDDTSLFKELSKRMQEKKLTLSAAESLTGGMFQETFTSIPGAGGLINGGVVCYTNEVKAKVLNVKLE
TIKNEGVVSATCAKELAENVAKLMESDIGVSFTGVAGPDELEGNPVGTVYIGIYHDGEARAEKLNLGGSRTSIRKRSSLY
GAYFLLKSLA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=243792 CKF48_RS00245 WP_095369462.1 48858..50090(-) (cinA) [Cytobacillus kochii strain BDGP4]
ATGAATGCTGAAATTATTGCCGTTGGCTCTGAGTTGTTATTAGGACAAATTAACAATACGAACGCCAAATTTTTATCACA
GCAGTTAGCTGACCTTGGTGTGAATGTTTTTTATCATACGGTCGTCGGAGACAATGCGGGGCGGTTAGAGTCTGCTATAA
AAATTGCTGAAAATAGAGCTGAACTCATTATCTTCACTGGTGGGCTTGGTCCGACAAAAGACGATTTAACAAAAGAAACC
ATTGCTAAGCATTTGCAAACAAATCTCGTAATGGATGATACAGCACTGGCGTCTATTGAAGAATATTTTAAACGGACGAA
TCGACCAATGACTGAAAATAATCGTAAGCAAGCCTTAGTTCTTTCTGGTGCGAAAGTACTTCCTAATGATTACGGTATGG
CACCTGGTATGTTTTATCAGACGGAAAATAAGCAATATATGCTTTTACCTGGGCCACCAAAAGAAATGGAACCGATGTTT
TTGAAATACGGATTTTCTGCAATAAAATCACAATCAGTAGAAGAAGCAGTTATCTCGTCGCGTGTCCTTAGATTCTTTGG
CATTGGTGAAGCAATGCTAGAGGCGGAAATAGAAGATATACTTGATAACCAAACAAACCCGACGATTGCGCCGTTAGCGG
GAGATCATGAAGTTACATTGAGGTTGACAGCCAAACATCATAATCTTGATGCTGCTTTAACACTTTTGGAAGAAAAAGAG
AAAGAAATTATGGCAGTAGTAGGAGACTATTTTTACGGTTATGATGATACGTCGCTCTTTAAAGAGCTCTCAAAAAGAAT
GCAGGAAAAGAAATTAACCCTGTCTGCTGCGGAAAGTTTAACTGGGGGCATGTTTCAAGAAACATTTACATCGATTCCTG
GAGCTGGTGGGCTAATAAATGGTGGCGTCGTTTGTTATACAAATGAAGTAAAAGCTAAAGTACTCAATGTAAAGCTAGAG
ACAATTAAAAATGAAGGTGTTGTCAGTGCTACATGTGCAAAGGAACTTGCGGAAAATGTCGCCAAGTTAATGGAAAGTGA
CATTGGTGTAAGCTTTACGGGTGTTGCCGGACCTGATGAATTAGAAGGCAATCCAGTCGGTACCGTTTATATAGGGATTT
ATCACGATGGTGAAGCAAGAGCTGAGAAGCTCAACCTTGGTGGTTCCCGCACATCAATCAGAAAGAGGTCATCTCTTTAT
GGCGCCTATTTTCTATTGAAATCCTTGGCGTAG

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(258-408)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A248TCH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

60.197

99.268

0.598
  cinA Streptococcus mutans UA159

43.478

100

0.439
  cinA Streptococcus pneumoniae TIGR4

42.959

100

0.439
  cinA Streptococcus mitis SK321

42.959

100

0.439
  cinA Streptococcus mitis NCTC 12261

42.721

100

0.437
  cinA Streptococcus pneumoniae Rx1

42.721

100

0.437
  cinA Streptococcus pneumoniae R6

42.721

100

0.437
  cinA Streptococcus pneumoniae D39

42.482

100

0.434
  cinA Streptococcus suis isolate S10

36.715

100

0.371

Multiple sequence alignment