Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CJ010_RS03440 Genome accession   NZ_CP022958
Coordinates   717092..718126 (-) Length   344 a.a.
NCBI ID   WP_141016747.1    Uniprot ID   A0A4Y6KN58
Organism   Azoarcus sp. DD4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 712092..723126
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJ010_RS03410 (CJ010_03375) hprK 712577..713518 (-) 942 WP_141016741.1 HPr(Ser) kinase/phosphatase -
  CJ010_RS03415 (CJ010_03380) ptsN 713487..713972 (-) 486 WP_141016742.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CJ010_RS03420 (CJ010_03385) hpf 714109..714432 (-) 324 WP_141016743.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CJ010_RS03425 (CJ010_03390) rpoN/rpoN1 714446..715903 (-) 1458 WP_141016744.1 RNA polymerase factor sigma-54 Machinery gene
  CJ010_RS03430 (CJ010_03395) lptB 715916..716638 (-) 723 WP_141016745.1 LPS export ABC transporter ATP-binding protein -
  CJ010_RS03435 (CJ010_03400) recX 716625..717074 (-) 450 WP_141016746.1 recombination regulator RecX -
  CJ010_RS03440 (CJ010_03405) recA 717092..718126 (-) 1035 WP_141016747.1 recombinase RecA Machinery gene
  CJ010_RS03445 (CJ010_03410) - 718325..718810 (-) 486 WP_371415682.1 CinA family protein -
  CJ010_RS03450 (CJ010_03415) - 718813..719295 (-) 483 WP_141016749.1 phosphatidylglycerophosphatase A -
  CJ010_RS03455 (CJ010_03420) thiL 719303..720298 (-) 996 WP_141016750.1 thiamine-phosphate kinase -
  CJ010_RS03460 (CJ010_03425) - 720566..720847 (-) 282 WP_141016751.1 RnfH family protein -
  CJ010_RS03465 (CJ010_03430) - 720870..721610 (-) 741 WP_141016752.1 electron transport complex subunit E -
  CJ010_RS03470 (CJ010_03435) rsxG 721621..722247 (-) 627 WP_141016753.1 electron transport complex subunit RsxG -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36774.24 Da        Isoelectric Point: 5.5503

>NTDB_id=243710 CJ010_RS03440 WP_141016747.1 717092..718126(-) (recA) [Azoarcus sp. DD4]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVV
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNITDLLISQPDTGEQALEIADMLVRSGGVDVVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRMDIRRTGTIKRGDEVVGS
ETKVKVVKNKVSPPFKEAHFDILYGEGVSREGEIIDLGVDHKIVDKSGAWYAYNGDKIGQGKDNAREFLRANPALAREIE
NKVRVALGLKEMPVDGILPAAAEA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=243710 CJ010_RS03440 WP_141016747.1 717092..718126(-) (recA) [Azoarcus sp. DD4]
ATGGACGACAACAAGGCCAAGGCCCTTGCCGCGGCGCTCTCGCAGATCGAAAAGCAGTTCGGCAAGGGTTCGATCATGCG
CATGGGCGACGGCAATGTCGAAAAGGACATCCAGACCGTTTCCACCGGCTCGCTCGGGCTCGACATCGCGCTCGGCCTCG
GCGGCCTGCCGCGCGGCCGCGTGGTCGAGATCTACGGTCCTGAATCCTCCGGCAAGACCACGCTCACGCTGCAGGTCGTC
GCCGAAATGCAGAAGCTGGGCGGCACCGCGGCCTTCATCGACGCCGAGCACGCGCTCGACGTCGGCTATGCCGAAAAGCT
CGGCGTGAACATCACCGACCTGCTGATCTCGCAGCCTGACACCGGCGAACAGGCGCTCGAAATCGCCGACATGCTGGTGC
GCTCGGGCGGTGTCGACGTCGTCGTCATCGACTCGGTCGCCGCGCTCACGCCCAAGGCCGAAATCGAAGGCGAGATGGGC
GACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACCGCCAACATCAAGCGCACCAACAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGTGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCGGTGCGCATGGACATCCGCCGCACCGGCACGATCAAGCGCGGCGACGAAGTGGTCGGCTCG
GAAACCAAGGTCAAGGTCGTCAAGAACAAGGTGTCGCCGCCGTTCAAGGAAGCGCACTTCGACATCCTCTACGGCGAAGG
CGTGTCGCGCGAGGGTGAGATCATCGACCTCGGCGTGGATCACAAGATCGTCGACAAGTCCGGCGCCTGGTACGCCTACA
ACGGCGACAAGATCGGCCAGGGCAAGGACAACGCTCGCGAATTCCTGCGCGCCAACCCGGCACTGGCGCGCGAGATCGAG
AACAAGGTCCGCGTCGCCCTCGGCCTCAAGGAAATGCCGGTCGACGGCATCCTGCCGGCGGCGGCCGAGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4Y6KN58

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

83.912

92.151

0.773
  recA Pseudomonas stutzeri DSM 10701

74.006

95.058

0.703
  recA Vibrio cholerae strain A1552

73.089

95.058

0.695
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.089

95.058

0.695
  recA Acinetobacter baylyi ADP1

72.171

95.058

0.686
  recA Acinetobacter baumannii D1279779

71.56

95.058

0.68
  recA Neisseria gonorrhoeae MS11

70.606

95.93

0.677
  recA Neisseria gonorrhoeae MS11

70.606

95.93

0.677
  recA Neisseria gonorrhoeae strain FA1090

70.606

95.93

0.677
  recA Glaesserella parasuis strain SC1401

70.462

94.477

0.666
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.868

97.093

0.64
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.565

96.802

0.625
  recA Helicobacter pylori 26695

63.501

97.965

0.622
  recA Helicobacter pylori strain NCTC11637

63.501

97.965

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

64.134

95.64

0.613
  recA Latilactobacillus sakei subsp. sakei 23K

62.236

96.221

0.599
  recA Streptococcus mutans UA159

61.862

96.802

0.599
  recA Streptococcus mitis NCTC 12261

62.006

95.64

0.593
  recA Streptococcus mitis SK321

62.006

95.64

0.593
  recA Streptococcus pneumoniae Rx1

61.702

95.64

0.59
  recA Streptococcus pneumoniae D39

61.702

95.64

0.59
  recA Streptococcus pneumoniae R6

61.702

95.64

0.59
  recA Streptococcus pneumoniae TIGR4

61.702

95.64

0.59
  recA Streptococcus pyogenes NZ131

61.515

95.93

0.59
  recA Lactococcus lactis subsp. cremoris KW2

61.162

95.058

0.581
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.185

94.186

0.567

Multiple sequence alignment