Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   EBN1_RS09540 Genome accession   NC_006513
Coordinates   2018063..2019103 (-) Length   346 a.a.
NCBI ID   WP_011237739.1    Uniprot ID   Q5P3R8
Organism   Aromatoleum aromaticum EbN1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2013063..2024103
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EBN1_RS09510 (EB_RS09385) hprK 2013576..2014517 (-) 942 WP_011237733.1 HPr(Ser) kinase/phosphatase -
  EBN1_RS09515 (EB_RS09390) ptsN 2014486..2014971 (-) 486 WP_011237734.1 PTS IIA-like nitrogen regulatory protein PtsN -
  EBN1_RS09520 (EB_RS09395) raiA 2015102..2015425 (-) 324 WP_011237735.1 ribosome-associated translation inhibitor RaiA -
  EBN1_RS09525 (EB_RS09400) rpoN/rpoN1 2015440..2016873 (-) 1434 WP_011237736.1 RNA polymerase factor sigma-54 Machinery gene
  EBN1_RS09530 (EB_RS09405) lptB 2016894..2017616 (-) 723 WP_011237737.1 LPS export ABC transporter ATP-binding protein -
  EBN1_RS09535 (EB_RS09410) recX 2017603..2018052 (-) 450 WP_041646128.1 recombination regulator RecX -
  EBN1_RS09540 (EB_RS09415) recA 2018063..2019103 (-) 1041 WP_011237739.1 recombinase RecA Machinery gene
  EBN1_RS09545 (EB_RS09420) - 2019166..2019666 (-) 501 WP_011237740.1 nicotinamide-nucleotide amidohydrolase family protein -
  EBN1_RS09550 (EB_RS09425) - 2019668..2020147 (-) 480 WP_041647110.1 phosphatidylglycerophosphatase A -
  EBN1_RS09555 (EB_RS09430) thiL 2020205..2021164 (-) 960 WP_011237742.1 thiamine-phosphate kinase -
  EBN1_RS09560 (EB_RS09435) - 2021281..2022330 (-) 1050 WP_011237743.1 TAXI family TRAP transporter solute-binding subunit -
  EBN1_RS09565 (EB_RS09440) - 2022377..2023030 (-) 654 WP_011237744.1 zinc ribbon domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 36953.51 Da        Isoelectric Point: 6.3036

>NTDB_id=24112 EBN1_RS09540 WP_011237739.1 2018063..2019103(-) (recA) [Aromatoleum aromaticum EbN1]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGTIERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTAAFIDAEHALDVGYAEKLGVNIQDLLISQPDTGEQALEIADMLVRSGGVEIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRLDIRRTGAIKKGDEVVGS
ETRCKVVKNKVAPPFKEAHFDILYGEGISREGEIIDLGVQHKIVDKSGAWYAYKGEKIGQGKDNSREFLRANPALAREIE
NKVRAQVGLNAMAVEAAPAGVAPVEP

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=24112 EBN1_RS09540 WP_011237739.1 2018063..2019103(-) (recA) [Aromatoleum aromaticum EbN1]
ATGGACGACAACAAGGCCAAGGCCCTCGCCGCCGCGCTCTCGCAGATCGAGAAGCAGTTCGGCAAAGGCTCGATCATGCG
GATGGGCGACGGCACCATCGAACGTGACATCCAGACGGTGTCGACCGGCTCGCTCGGTCTCGACATCGCGCTCGGTCTGG
GCGGTTTGCCGCGCGGCCGGGTCGTCGAAATCTACGGCCCGGAATCCTCCGGCAAGACGACGTTGACGCTGCAGGTCATC
GCCGAAATGCAGAAGCTCGGCGGCACCGCCGCATTCATCGATGCCGAGCATGCGCTCGACGTCGGCTACGCCGAGAAGCT
CGGCGTGAACATCCAGGACCTCCTGATCTCGCAGCCGGACACCGGTGAGCAGGCGCTCGAGATCGCCGACATGCTGGTGC
GTTCGGGAGGCGTCGAGATCGTCGTCATCGACTCGGTCGCGGCGCTGACTCCGAAAGCCGAGATCGAAGGCGAGATGGGC
GACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTCAGGAAGCTCACCGCGAACATCAAGCGCACCAACAC
CCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGTAGCCCGGAGACCACGACCGGCGGCAACG
CGCTGAAGTTCTACGCCTCGGTACGGCTCGACATCCGCCGCACTGGCGCGATCAAGAAAGGCGACGAAGTGGTCGGCTCC
GAGACGCGCTGCAAGGTCGTCAAGAACAAGGTCGCGCCGCCGTTCAAGGAAGCGCATTTCGACATCCTCTACGGCGAAGG
CATCTCGCGCGAAGGCGAGATCATCGACCTCGGCGTGCAGCACAAGATCGTCGACAAGTCCGGCGCATGGTATGCGTACA
AGGGCGAGAAGATCGGCCAGGGCAAGGACAATTCACGCGAATTCCTGCGCGCGAACCCGGCTCTCGCGCGCGAGATCGAA
AACAAGGTCCGCGCGCAGGTCGGCCTGAACGCGATGGCTGTCGAGGCTGCACCCGCCGGGGTGGCTCCGGTCGAGCCCTG
A

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q5P3R8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.965

91.618

0.76
  recA Pseudomonas stutzeri DSM 10701

73.669

97.688

0.72
  recA Acinetobacter baylyi ADP1

72.477

94.509

0.685
  recA Neisseria gonorrhoeae MS11

70.746

96.821

0.685
  recA Neisseria gonorrhoeae MS11

70.746

96.821

0.685
  recA Neisseria gonorrhoeae strain FA1090

70.746

96.821

0.685
  recA Vibrio cholerae strain A1552

72.84

93.642

0.682
  recA Vibrio cholerae O1 biovar El Tor strain E7946

72.84

93.642

0.682
  recA Acinetobacter baumannii D1279779

72.171

94.509

0.682
  recA Glaesserella parasuis strain SC1401

68.546

97.399

0.668
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

65.861

95.665

0.63
  recA Helicobacter pylori strain NCTC11637

62.428

100

0.624
  recA Bacillus subtilis subsp. subtilis str. 168

65.152

95.376

0.621
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.565

96.243

0.621
  recA Helicobacter pylori 26695

62.139

100

0.621
  recA Latilactobacillus sakei subsp. sakei 23K

61.607

97.11

0.598
  recA Streptococcus mitis SK321

61.702

95.087

0.587
  recA Streptococcus mitis NCTC 12261

61.702

95.087

0.587
  recA Streptococcus pneumoniae R6

61.398

95.087

0.584
  recA Streptococcus pneumoniae TIGR4

61.398

95.087

0.584
  recA Streptococcus pneumoniae Rx1

61.398

95.087

0.584
  recA Streptococcus pneumoniae D39

61.398

95.087

0.584
  recA Streptococcus mutans UA159

61.027

95.665

0.584
  recA Streptococcus pyogenes NZ131

60.303

95.376

0.575
  recA Lactococcus lactis subsp. cremoris KW2

60.856

94.509

0.575
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.259

93.642

0.555

Multiple sequence alignment