Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BSG32_RS16525 Genome accession   NZ_CP022552
Coordinates   3271979..3273028 (-) Length   349 a.a.
NCBI ID   WP_025559473.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain MAVP-R     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3251182..3286763 3271979..3273028 within 0


Gene organization within MGE regions


Location: 3251182..3286763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG32_RS16440 (BSG32_16450) - 3251182..3253134 (+) 1953 WP_025558697.1 hypothetical protein -
  BSG32_RS16445 (BSG32_16455) - 3253121..3255145 (+) 2025 WP_025558698.1 hypothetical protein -
  BSG32_RS16450 (BSG32_16460) - 3255138..3255830 (+) 693 WP_031844092.1 hypothetical protein -
  BSG32_RS16455 (BSG32_16465) - 3255841..3257319 (+) 1479 WP_025558700.1 site-specific integrase -
  BSG32_RS16460 (BSG32_16470) - 3257493..3259223 (+) 1731 WP_025558701.1 hypothetical protein -
  BSG32_RS16465 (BSG32_16475) - 3259207..3260913 (+) 1707 WP_025558702.1 hypothetical protein -
  BSG32_RS16470 (BSG32_16480) - 3261120..3262235 (+) 1116 WP_029801574.1 hypothetical protein -
  BSG32_RS16475 (BSG32_16485) - 3262377..3263207 (+) 831 WP_025558704.1 hypothetical protein -
  BSG32_RS16480 (BSG32_16490) - 3263326..3264048 (+) 723 WP_069505457.1 hypothetical protein -
  BSG32_RS16485 (BSG32_16495) - 3264175..3264696 (+) 522 WP_025558706.1 hypothetical protein -
  BSG32_RS16490 (BSG32_16500) - 3264779..3265135 (+) 357 WP_089190226.1 hypothetical protein -
  BSG32_RS16495 (BSG32_16505) - 3265303..3266085 (-) 783 WP_025558708.1 hypothetical protein -
  BSG32_RS16500 (BSG32_16510) - 3266147..3267181 (-) 1035 WP_140082081.1 serine/threonine-protein kinase -
  BSG32_RS16505 (BSG32_16515) - 3267184..3267639 (-) 456 WP_025558710.1 hypothetical protein -
  BSG32_RS16510 (BSG32_16520) - 3267939..3269054 (-) 1116 WP_025558711.1 hypothetical protein -
  BSG32_RS16515 (BSG32_16525) - 3269328..3270500 (-) 1173 WP_238150492.1 hypothetical protein -
  BSG32_RS16520 (BSG32_16530) - 3270651..3271883 (+) 1233 WP_025558713.1 plasmid partitioning protein ParB -
  BSG32_RS16525 (BSG32_16535) recA 3271979..3273028 (-) 1050 WP_025559473.1 recombinase RecA Machinery gene
  BSG32_RS16530 (BSG32_16540) - 3273234..3273728 (-) 495 Protein_2944 ATPase domain-containing protein -
  BSG32_RS16535 (BSG32_16545) pncC 3273928..3274410 (-) 483 WP_021450025.1 nicotinamide-nucleotide amidase -
  BSG32_RS16540 (BSG32_16550) mutS 3274495..3277056 (+) 2562 WP_005478546.1 DNA mismatch repair protein MutS -
  BSG32_RS16545 (BSG32_16555) rpoS 3277136..3278125 (-) 990 WP_005478537.1 RNA polymerase sigma factor RpoS Regulator
  BSG32_RS16550 (BSG32_16560) - 3278206..3279129 (-) 924 WP_021450027.1 peptidoglycan DD-metalloendopeptidase family protein -
  BSG32_RS16555 (BSG32_16565) - 3279144..3279770 (-) 627 WP_005455562.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  BSG32_RS16560 (BSG32_16570) surE 3279770..3280546 (-) 777 WP_021450028.1 5'/3'-nucleotidase SurE -
  BSG32_RS16565 (BSG32_16575) truD 3280546..3281589 (-) 1044 WP_021450029.1 tRNA pseudouridine(13) synthase TruD -
  BSG32_RS16570 (BSG32_16580) ispF 3281636..3282112 (-) 477 WP_005380896.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BSG32_RS16575 (BSG32_16585) ispD 3282130..3282834 (-) 705 WP_017449147.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BSG32_RS16580 (BSG32_16590) ftsB 3282836..3283117 (-) 282 WP_005455577.1 cell division protein FtsB -
  BSG32_RS16585 (BSG32_16595) eno 3283743..3285044 (-) 1302 WP_005455579.1 phosphopyruvate hydratase -
  BSG32_RS16590 (BSG32_16600) - 3285123..3286763 (-) 1641 WP_005455581.1 CTP synthase -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37521.95 Da        Isoelectric Point: 5.1824

>NTDB_id=240675 BSG32_RS16525 WP_025559473.1 3271979..3273028(-) (recA) [Vibrio parahaemolyticus strain MAVP-R]
MDENKQKALAAALGQIEKQFGKGSIMKLGDNRAMDVETISTGSLSLDIALGAGGLPMGRIVEIFGPESSGKTTLTLEVIA
AAQKQGKTCAFIDAEHALDPIYAQKLGVNIDELLVSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEMGD
SHMGLQARLLSQSMRKMTGNLKASNCMCIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKEGDEVVGNE
TRIKVVKNKIAAPFKEANTQILYGKGFNRYGELIDLGVKHKLVEKAGAWYSYQGDKIGQGKANACKFIEEHSHISQELET
KLRELLLAPVKAEGETNAASEEVTGDEEF

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=240675 BSG32_RS16525 WP_025559473.1 3271979..3273028(-) (recA) [Vibrio parahaemolyticus strain MAVP-R]
ATGGATGAGAACAAGCAGAAAGCGTTAGCAGCAGCGCTCGGCCAAATTGAAAAGCAATTCGGTAAAGGCTCTATCATGAA
GTTGGGTGACAACCGAGCAATGGATGTTGAAACAATTTCTACAGGTTCACTTTCTCTAGATATTGCTCTCGGTGCGGGCG
GTCTACCTATGGGGCGCATCGTAGAAATCTTTGGCCCTGAGTCATCAGGTAAAACAACACTTACTCTTGAAGTCATTGCT
GCTGCACAGAAGCAAGGTAAGACTTGTGCTTTTATTGATGCAGAACATGCCCTTGATCCTATCTATGCTCAAAAGCTAGG
TGTTAATATCGATGAGTTACTGGTTTCTCAGCCTGATACAGGTGAACAAGCTCTTGAAATCTGTGATGCTCTAGCTCGTT
CGGGTGCTGTTGATGTGATCGTTGTTGACTCGGTAGCTGCATTGACTCCAAAAGCTGAAATTGAAGGTGAAATGGGCGAC
AGCCACATGGGCCTTCAGGCGCGCCTACTTTCTCAAAGCATGAGAAAAATGACGGGTAATCTTAAAGCCTCAAACTGTAT
GTGTATCTTCATCAACCAGATCCGTATGAAGATAGGCGTTATGTTTGGCAACCCAGAAACAACCACTGGTGGTAATGCTC
TAAAATTCTACGCTTCTGTTCGTCTGGATATCCGCCGTACTGGCGCTATCAAAGAAGGTGATGAGGTTGTTGGTAACGAA
ACGCGCATCAAAGTGGTTAAAAACAAGATTGCAGCACCATTTAAAGAAGCAAACACGCAAATCCTTTATGGAAAGGGCTT
TAACCGTTATGGTGAGCTAATTGACCTTGGCGTGAAACACAAGTTGGTAGAAAAGGCTGGTGCTTGGTACAGCTACCAAG
GTGATAAAATTGGTCAGGGTAAAGCAAATGCCTGTAAGTTTATTGAAGAACATAGCCACATTTCTCAAGAGCTAGAGACT
AAACTACGAGAATTACTATTAGCTCCTGTGAAGGCTGAAGGCGAAACGAACGCTGCATCTGAAGAAGTTACTGGGGATGA
AGAGTTTTAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Vibrio cholerae strain A1552

87.826

98.854

0.868
  recA Vibrio cholerae O1 biovar El Tor strain E7946

87.826

98.854

0.868
  recA Acinetobacter baylyi ADP1

73.314

97.708

0.716
  recA Pseudomonas stutzeri DSM 10701

76.147

93.696

0.713
  recA Acinetobacter baumannii D1279779

75.229

93.696

0.705
  recA Glaesserella parasuis strain SC1401

67.816

99.713

0.676
  recA Ralstonia pseudosolanacearum GMI1000

71.383

89.112

0.636
  recA Neisseria gonorrhoeae MS11

68.098

93.41

0.636
  recA Neisseria gonorrhoeae MS11

68.098

93.41

0.636
  recA Neisseria gonorrhoeae strain FA1090

68.098

93.41

0.636
  recA Bacillus subtilis subsp. subtilis str. 168

62.617

91.977

0.576
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

60.36

95.415

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.423

94.842

0.573
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

62.069

91.404

0.567
  recA Helicobacter pylori strain NCTC11637

60.308

93.123

0.562
  recA Streptococcus pneumoniae D39

60.681

92.55

0.562
  recA Streptococcus pneumoniae TIGR4

60.681

92.55

0.562
  recA Streptococcus pneumoniae Rx1

60.681

92.55

0.562
  recA Streptococcus pneumoniae R6

60.681

92.55

0.562
  recA Helicobacter pylori 26695

60

93.123

0.559
  recA Streptococcus mutans UA159

59.385

93.123

0.553
  recA Streptococcus mitis NCTC 12261

59.752

92.55

0.553
  recA Streptococcus mitis SK321

59.443

92.55

0.55
  recA Latilactobacillus sakei subsp. sakei 23K

59.813

91.977

0.55
  recA Streptococcus pyogenes NZ131

58.769

93.123

0.547
  recA Lactococcus lactis subsp. cremoris KW2

57.895

92.55

0.536

Multiple sequence alignment