Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   BSG32_RS16545 Genome accession   NZ_CP022552
Coordinates   3277136..3278125 (-) Length   329 a.a.
NCBI ID   WP_005478537.1    Uniprot ID   A8D8R0
Organism   Vibrio parahaemolyticus strain MAVP-R     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 3251182..3286763 3277136..3278125 within 0


Gene organization within MGE regions


Location: 3251182..3286763
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSG32_RS16440 (BSG32_16450) - 3251182..3253134 (+) 1953 WP_025558697.1 hypothetical protein -
  BSG32_RS16445 (BSG32_16455) - 3253121..3255145 (+) 2025 WP_025558698.1 hypothetical protein -
  BSG32_RS16450 (BSG32_16460) - 3255138..3255830 (+) 693 WP_031844092.1 hypothetical protein -
  BSG32_RS16455 (BSG32_16465) - 3255841..3257319 (+) 1479 WP_025558700.1 site-specific integrase -
  BSG32_RS16460 (BSG32_16470) - 3257493..3259223 (+) 1731 WP_025558701.1 hypothetical protein -
  BSG32_RS16465 (BSG32_16475) - 3259207..3260913 (+) 1707 WP_025558702.1 hypothetical protein -
  BSG32_RS16470 (BSG32_16480) - 3261120..3262235 (+) 1116 WP_029801574.1 hypothetical protein -
  BSG32_RS16475 (BSG32_16485) - 3262377..3263207 (+) 831 WP_025558704.1 hypothetical protein -
  BSG32_RS16480 (BSG32_16490) - 3263326..3264048 (+) 723 WP_069505457.1 hypothetical protein -
  BSG32_RS16485 (BSG32_16495) - 3264175..3264696 (+) 522 WP_025558706.1 hypothetical protein -
  BSG32_RS16490 (BSG32_16500) - 3264779..3265135 (+) 357 WP_089190226.1 hypothetical protein -
  BSG32_RS16495 (BSG32_16505) - 3265303..3266085 (-) 783 WP_025558708.1 hypothetical protein -
  BSG32_RS16500 (BSG32_16510) - 3266147..3267181 (-) 1035 WP_140082081.1 serine/threonine-protein kinase -
  BSG32_RS16505 (BSG32_16515) - 3267184..3267639 (-) 456 WP_025558710.1 hypothetical protein -
  BSG32_RS16510 (BSG32_16520) - 3267939..3269054 (-) 1116 WP_025558711.1 hypothetical protein -
  BSG32_RS16515 (BSG32_16525) - 3269328..3270500 (-) 1173 WP_238150492.1 hypothetical protein -
  BSG32_RS16520 (BSG32_16530) - 3270651..3271883 (+) 1233 WP_025558713.1 plasmid partitioning protein ParB -
  BSG32_RS16525 (BSG32_16535) recA 3271979..3273028 (-) 1050 WP_025559473.1 recombinase RecA Machinery gene
  BSG32_RS16530 (BSG32_16540) - 3273234..3273728 (-) 495 Protein_2944 ATPase domain-containing protein -
  BSG32_RS16535 (BSG32_16545) pncC 3273928..3274410 (-) 483 WP_021450025.1 nicotinamide-nucleotide amidase -
  BSG32_RS16540 (BSG32_16550) mutS 3274495..3277056 (+) 2562 WP_005478546.1 DNA mismatch repair protein MutS -
  BSG32_RS16545 (BSG32_16555) rpoS 3277136..3278125 (-) 990 WP_005478537.1 RNA polymerase sigma factor RpoS Regulator
  BSG32_RS16550 (BSG32_16560) - 3278206..3279129 (-) 924 WP_021450027.1 peptidoglycan DD-metalloendopeptidase family protein -
  BSG32_RS16555 (BSG32_16565) - 3279144..3279770 (-) 627 WP_005455562.1 protein-L-isoaspartate(D-aspartate) O-methyltransferase -
  BSG32_RS16560 (BSG32_16570) surE 3279770..3280546 (-) 777 WP_021450028.1 5'/3'-nucleotidase SurE -
  BSG32_RS16565 (BSG32_16575) truD 3280546..3281589 (-) 1044 WP_021450029.1 tRNA pseudouridine(13) synthase TruD -
  BSG32_RS16570 (BSG32_16580) ispF 3281636..3282112 (-) 477 WP_005380896.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  BSG32_RS16575 (BSG32_16585) ispD 3282130..3282834 (-) 705 WP_017449147.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  BSG32_RS16580 (BSG32_16590) ftsB 3282836..3283117 (-) 282 WP_005455577.1 cell division protein FtsB -
  BSG32_RS16585 (BSG32_16595) eno 3283743..3285044 (-) 1302 WP_005455579.1 phosphopyruvate hydratase -
  BSG32_RS16590 (BSG32_16600) - 3285123..3286763 (-) 1641 WP_005455581.1 CTP synthase -

Sequence

Protein


Download         Length: 329 a.a.        Molecular weight: 37560.38 Da        Isoelectric Point: 4.6096

>NTDB_id=240677 BSG32_RS16545 WP_005478537.1 3277136..3278125(-) (rpoS) [Vibrio parahaemolyticus strain MAVP-R]
MSISNTVSKVEEFEYDNASETTIDNELEKSSSTTEGKTAVREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRAL
RGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRT
IRLPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNS
DPEVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNM
ENLFNVEDD

Nucleotide


Download         Length: 990 bp        

>NTDB_id=240677 BSG32_RS16545 WP_005478537.1 3277136..3278125(-) (rpoS) [Vibrio parahaemolyticus strain MAVP-R]
ATGAGTATCAGCAACACAGTATCCAAAGTTGAAGAGTTTGAATACGACAATGCGTCAGAGACGACCATTGATAACGAACT
CGAAAAATCATCATCTACTACCGAAGGCAAAACAGCTGTCCGTGAAGAGTTTGACGCGAGCAGTAAAAGCCTAGACGCAA
CTCAATTGTATCTAGGTGAAATTGGCTTCTCACCTCTACTTACTGCTGAAGAAGAAGTCCTTTACGCCCGCAGAGCATTG
CGTGGTGATGAAGCGGCTCGTAAGCGCATGATCGAAAGTAACTTGCGTTTAGTAGTAAAAATTTCTCGTCGGTACAGCAA
CCGTGGCCTAGCGCTACTCGATCTTATTGAAGAAGGTAACCTCGGTTTGATCCGAGCGGTTGAAAAATTCGATCCAGAAA
GAGGCTTCCGTTTCTCAACTTACGCAACATGGTGGATCCGTCAAACGATCGAACGTGCGTTGATGAACCAAACTCGCACC
ATTCGCTTGCCTATTCATGTCGTGAAAGAGCTGAACATTTATCTGCGTACTGCGCGTGAACTTTCTCAAAAGCTCGATCA
TGAACCAACTGCAGAAGAAATTGCTGCTCAATTAGATATACCAGTAGAAGATGTCAGCAAAATGCTGCGTCTTAACGAGC
GTATTAGCTCCGTTGATACCCCAATTGGTGGTGACGGTGAAAAAGCGCTTCTGGATATTATTCCTGACGCAAACAACTCT
GATCCAGAAGTGTCGACTCAAGATGATGACATCAAATCGTCTTTGATCCATTGGTTGGAAGAGTTGAATCCAAAACAAAA
AGAAGTGCTTGCACGCCGTTTTGGTTTGCTTGGTTATGAGCCGTCTACGCTTGAAGAAGTGGGACGAGAGATTGGTCTTA
CCCGTGAGCGTGTACGTCAAATTCAAGTGGAGGGTTTACGTCGACTTCGTGAAATCCTAATTAAACAAGGCCTAAATATG
GAAAACTTGTTTAACGTTGAAGACGATTAA

Domains

Predicted by InterproScan.

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(52-85)

Sigma-70 region 2 (Sigma70_r2)

(90-159)

Sigma-70, region 4 (Sigma70_r4)

(258-311)

Sigma-70 region 3 (Sigma70_r3)

(170-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A8D8R0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

83.832

100

0.851

Multiple sequence alignment