Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CEW87_RS11990 Genome accession   NZ_CP022188
Coordinates   2610458..2611495 (-) Length   345 a.a.
NCBI ID   WP_108950968.1    Uniprot ID   A0A2U8GU81
Organism   Parazoarcus communis strain TSNA42     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2605458..2616495
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CEW87_RS11960 (CEW87_11945) hprK 2605897..2606859 (-) 963 WP_108973278.1 HPr(Ser) kinase/phosphatase -
  CEW87_RS11965 (CEW87_11950) ptsN 2606828..2607313 (-) 486 WP_108973280.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CEW87_RS11970 (CEW87_11955) hpf 2607447..2607770 (-) 324 WP_108973282.1 ribosome hibernation-promoting factor, HPF/YfiA family -
  CEW87_RS11975 (CEW87_11960) rpoN/rpoN1 2607788..2609242 (-) 1455 WP_108973284.1 RNA polymerase factor sigma-54 Machinery gene
  CEW87_RS11980 (CEW87_11965) lptB 2609270..2609992 (-) 723 WP_108973286.1 LPS export ABC transporter ATP-binding protein -
  CEW87_RS11985 (CEW87_11970) recX 2609979..2610428 (-) 450 WP_108973288.1 recombination regulator RecX -
  CEW87_RS11990 (CEW87_11975) recA 2610458..2611495 (-) 1038 WP_108950968.1 recombinase RecA Machinery gene
  CEW87_RS11995 (CEW87_11980) - 2611524..2612042 (-) 519 WP_108973290.1 CinA family protein -
  CEW87_RS12000 (CEW87_11985) - 2612047..2612538 (-) 492 WP_234418930.1 phosphatidylglycerophosphatase A -
  CEW87_RS12005 (CEW87_11990) thiL 2612531..2613490 (-) 960 WP_108973292.1 thiamine-phosphate kinase -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 36680.04 Da        Isoelectric Point: 5.3242

>NTDB_id=237492 CEW87_RS11990 WP_108950968.1 2610458..2611495(-) (recA) [Parazoarcus communis strain TSNA42]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGSIERDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKLGGTASFIDAEHALDVGYAEKLGVNIDDLLISQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGSPETTTGGNALKFYASVRMDIRRTGAIKKGDEVVGS
ETRVKVVKNKVAPPFKEAHFDILYGEGISREGEIIDLGVTYKIVDKSGAWYSYNGDKIGQGKDNSREFLRANPALAREIE
NKVRAAVGLGEMAALGGAAPVASEA

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=237492 CEW87_RS11990 WP_108950968.1 2610458..2611495(-) (recA) [Parazoarcus communis strain TSNA42]
ATGGACGACAACAAGGCCAAGGCGCTTGCCGCCGCGCTCTCGCAAATCGAGAAGCAATTCGGCAAGGGCTCGATCATGCG
GATGGGCGACGGCAGTATCGAGCGCGACATCCAGACCGTCTCCACCGGCTCGCTCGGGCTGGACATTGCCCTCGGCCTGG
GCGGCCTGCCGCGTGGCCGCGTAGTCGAGATCTACGGTCCGGAATCGTCCGGCAAGACCACGCTGACCCTCCAGGTCATC
GCCGAAATGCAGAAGCTCGGCGGCACCGCATCGTTTATCGACGCCGAGCATGCGCTCGACGTGGGCTACGCTGAGAAACT
CGGCGTCAACATCGACGACCTGCTGATTTCCCAGCCCGACACCGGCGAGCAGGCGCTCGAAATCGCCGACATGCTGGTGC
GTTCGGGCGGCGTGGATATCGTCGTCATCGACTCCGTCGCCGCACTGACCCCGAAAGCCGAAATCGAAGGCGAGATGGGC
GACCAGTTGCCAGGCCTTCAGGCACGACTGATGTCGCAGGCGCTGCGCAAACTGACCGCCAACATCAAGCGTACGAACAC
CCTCGTGATCTTCATCAACCAGATCCGGATGAAGATCGGCGTCATGTTCGGCAGCCCCGAAACCACCACCGGTGGTAACG
CCCTCAAGTTCTACGCATCGGTCCGCATGGACATCCGGCGTACCGGCGCCATCAAGAAGGGCGACGAAGTCGTCGGCTCG
GAAACGCGCGTCAAGGTGGTCAAGAACAAGGTCGCCCCGCCGTTCAAGGAGGCGCACTTCGACATCCTCTACGGAGAAGG
CATCTCCCGCGAAGGCGAGATCATCGACCTCGGCGTGACTTACAAGATCGTCGACAAGTCCGGCGCCTGGTATTCGTACA
ACGGCGACAAGATCGGCCAGGGCAAGGACAACTCACGCGAGTTCCTGCGCGCAAACCCGGCGCTGGCTCGCGAGATCGAG
AACAAGGTCCGCGCAGCCGTCGGACTGGGCGAAATGGCCGCGCTCGGTGGCGCGGCACCCGTCGCTTCCGAAGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2U8GU81

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.812

92.754

0.768
  recA Pseudomonas stutzeri DSM 10701

72.674

99.71

0.725
  recA Vibrio cholerae strain A1552

73.457

93.913

0.69
  recA Vibrio cholerae O1 biovar El Tor strain E7946

73.457

93.913

0.69
  recA Neisseria gonorrhoeae strain FA1090

72.34

95.362

0.69
  recA Neisseria gonorrhoeae MS11

72.34

95.362

0.69
  recA Neisseria gonorrhoeae MS11

72.34

95.362

0.69
  recA Acinetobacter baylyi ADP1

72.84

93.913

0.684
  recA Acinetobacter baumannii D1279779

72.531

93.913

0.681
  recA Glaesserella parasuis strain SC1401

68.249

97.681

0.667
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.768

95.072

0.635
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

65.152

95.652

0.623
  recA Helicobacter pylori strain NCTC11637

64.157

96.232

0.617
  recA Bacillus subtilis subsp. subtilis str. 168

64.742

95.362

0.617
  recA Helicobacter pylori 26695

63.855

96.232

0.614
  recA Streptococcus pyogenes NZ131

59.827

100

0.6
  recA Latilactobacillus sakei subsp. sakei 23K

62.424

95.652

0.597
  recA Streptococcus mitis SK321

61.012

97.391

0.594
  recA Streptococcus mutans UA159

60.961

96.522

0.588
  recA Streptococcus mitis NCTC 12261

61.094

95.362

0.583
  recA Streptococcus pneumoniae Rx1

61.094

95.362

0.583
  recA Streptococcus pneumoniae D39

61.094

95.362

0.583
  recA Streptococcus pneumoniae R6

61.094

95.362

0.583
  recA Streptococcus pneumoniae TIGR4

61.094

95.362

0.583
  recA Lactococcus lactis subsp. cremoris KW2

60.856

94.783

0.577
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

59.633

94.783

0.565

Multiple sequence alignment