Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CDO84_RS08105 Genome accession   NZ_CP021911
Coordinates   1612385..1613431 (+) Length   348 a.a.
NCBI ID   WP_003245789.1    Uniprot ID   A0A199WHQ8
Organism   Bacillus sp. MD-5     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1607385..1618431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS08075 (CDO84_08075) efpI 1607393..1608121 (+) 729 WP_040083146.1 EF-P-5 aminopentanone reductase -
  CDO84_RS08080 (CDO84_08080) - 1608202..1608459 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  CDO84_RS08085 (CDO84_08085) - 1608589..1609380 (+) 792 WP_040083145.1 YmfK family protein -
  CDO84_RS08090 (CDO84_08090) rodZ 1609447..1610313 (+) 867 WP_231560781.1 cell shape determination protein RodZ -
  CDO84_RS08095 (CDO84_08095) pgsA 1610363..1610944 (+) 582 WP_014664019.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CDO84_RS08100 (CDO84_08100) cinA 1610962..1612212 (+) 1251 WP_040083142.1 competence/damage-inducible protein A Machinery gene
  CDO84_RS08105 (CDO84_08105) recA 1612385..1613431 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  CDO84_RS08110 (CDO84_08110) - 1613598..1614773 (+) 1176 WP_014664022.1 serine hydrolase domain-containing protein -
  CDO84_RS08115 (CDO84_08115) rny 1615050..1616612 (+) 1563 WP_003221010.1 ribonuclease Y -
  CDO84_RS08120 (CDO84_08120) ymdB 1616682..1617476 (+) 795 WP_040083141.1 2',3'-cyclic-nucleotide 2'-phosphodiesterase -
  CDO84_RS08125 (CDO84_08125) spoVS 1617675..1617935 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -

Sequence

Protein


Download         Length: 348 a.a.        Molecular weight: 38059.21 Da        Isoelectric Point: 4.7315

>NTDB_id=234795 CDO84_RS08105 WP_003245789.1 1612385..1613431(+) (recA) [Bacillus sp. MD-5]
MSDRQAALDMALKQIEKQFGKGSIMKLGEKTDTRISTVPSGSLALDTALGIGGYPRGRIIEVYGPESSGKTTVALHAIAE
VQQQGGQAAFIDAEHALDPVYAQKLGVNIEELLLSQPDTGEQALEIAEALVRSGAVDIVVVDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAEQLKQGNDVMGNKT
KIKVVKNKVAPPFRTAEVDIMYGEGISKEGEIIDLGTELDIVQKSGSWYSYEEERLGQGRENAKQFLKENKDIMLMIQEQ
IREHYGLDNNGVVQQQAEETQEELEFEE

Nucleotide


Download         Length: 1047 bp        

>NTDB_id=234795 CDO84_RS08105 WP_003245789.1 1612385..1613431(+) (recA) [Bacillus sp. MD-5]
ATGAGTGATCGTCAGGCAGCCTTAGATATGGCTCTTAAACAAATAGAAAAACAGTTCGGCAAAGGTTCCATTATGAAACT
GGGAGAAAAGACAGATACAAGAATTTCTACTGTCCCAAGTGGCTCCCTTGCTCTTGATACGGCATTGGGAATTGGCGGAT
ATCCGCGCGGACGGATTATTGAAGTATACGGTCCTGAAAGCTCAGGTAAAACAACTGTGGCGCTTCATGCAATTGCTGAA
GTACAGCAGCAGGGCGGACAAGCCGCGTTTATCGATGCGGAGCATGCGTTAGATCCGGTATACGCGCAAAAGCTTGGTGT
TAACATCGAAGAGCTTTTACTGTCTCAGCCTGACACAGGCGAGCAGGCGCTTGAAATTGCGGAAGCATTGGTTCGAAGCG
GGGCAGTTGACATTGTTGTTGTCGACTCTGTAGCTGCTCTCGTTCCGAAAGCGGAAATTGAAGGCGACATGGGGGATTCG
CATGTCGGTCTACAAGCACGCTTAATGTCTCAAGCGCTTCGTAAGCTTTCAGGAGCCATTAACAAATCGAAGACAATCGC
GATTTTCATTAACCAAATTCGTGAAAAAGTCGGCGTTATGTTCGGGAACCCGGAAACAACTCCTGGCGGCCGTGCACTGA
AATTCTATTCTTCCGTGCGTCTAGAAGTGCGCCGTGCTGAACAGCTGAAACAAGGCAATGACGTAATGGGGAACAAAACG
AAAATCAAAGTCGTGAAAAACAAGGTGGCTCCGCCGTTCCGTACAGCCGAGGTTGACATTATGTACGGAGAAGGCATTTC
AAAAGAAGGAGAAATCATTGATCTAGGAACTGAACTTGATATCGTGCAAAAAAGCGGTTCATGGTACTCTTATGAAGAAG
AGCGTCTTGGCCAAGGCCGTGAAAATGCAAAACAATTCCTGAAAGAAAATAAAGATATCATGCTGATGATCCAGGAGCAG
ATTCGCGAACATTACGGCTTGGATAATAACGGAGTAGTGCAGCAGCAAGCTGAAGAGACACAAGAAGAACTCGAATTTGA
AGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WHQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

100

100

1
  recA Latilactobacillus sakei subsp. sakei 23K

74.924

93.966

0.704
  recA Streptococcus pneumoniae D39

66.477

100

0.672
  recA Streptococcus pneumoniae R6

66.477

100

0.672
  recA Streptococcus pneumoniae TIGR4

66.477

100

0.672
  recA Streptococcus pneumoniae Rx1

66.477

100

0.672
  recA Streptococcus mutans UA159

66.092

100

0.661
  recA Streptococcus mitis SK321

65.994

99.713

0.658
  recA Streptococcus mitis NCTC 12261

68.788

94.828

0.652
  recA Streptococcus pyogenes NZ131

67.683

94.253

0.638
  recA Neisseria gonorrhoeae strain FA1090

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Neisseria gonorrhoeae MS11

63.584

99.425

0.632
  recA Lactococcus lactis subsp. cremoris KW2

65.758

94.828

0.624
  recA Helicobacter pylori 26695

63.081

98.851

0.624
  recA Helicobacter pylori strain NCTC11637

63.081

98.851

0.624
  recA Ralstonia pseudosolanacearum GMI1000

64.742

94.54

0.612
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.988

98.276

0.609
  recA Glaesserella parasuis strain SC1401

60.58

99.138

0.601
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.914

93.966

0.601
  recA Vibrio cholerae O1 biovar El Tor strain E7946

60.465

98.851

0.598
  recA Vibrio cholerae strain A1552

60.465

98.851

0.598
  recA Acinetobacter baumannii D1279779

61.243

97.126

0.595
  recA Pseudomonas stutzeri DSM 10701

62.813

91.954

0.578
  recA Acinetobacter baylyi ADP1

62.422

92.529

0.578
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

60.681

92.816

0.563

Multiple sequence alignment