Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CDO84_RS08100 Genome accession   NZ_CP021911
Coordinates   1610962..1612212 (+) Length   416 a.a.
NCBI ID   WP_040083142.1    Uniprot ID   -
Organism   Bacillus sp. MD-5     
Function   unknown (predicted from homology)   
Unclear

Genomic Context

Location: 1605962..1617212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDO84_RS08070 (CDO84_08070) - 1606052..1607338 (+) 1287 WP_040083147.1 pitrilysin family protein -
  CDO84_RS08075 (CDO84_08075) efpI 1607393..1608121 (+) 729 WP_040083146.1 EF-P-5 aminopentanone reductase -
  CDO84_RS08080 (CDO84_08080) - 1608202..1608459 (+) 258 WP_003245199.1 DUF3243 domain-containing protein -
  CDO84_RS08085 (CDO84_08085) - 1608589..1609380 (+) 792 WP_040083145.1 YmfK family protein -
  CDO84_RS08090 (CDO84_08090) rodZ 1609447..1610313 (+) 867 WP_231560781.1 cell shape determination protein RodZ -
  CDO84_RS08095 (CDO84_08095) pgsA 1610363..1610944 (+) 582 WP_014664019.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  CDO84_RS08100 (CDO84_08100) cinA 1610962..1612212 (+) 1251 WP_040083142.1 competence/damage-inducible protein A Machinery gene
  CDO84_RS08105 (CDO84_08105) recA 1612385..1613431 (+) 1047 WP_003245789.1 recombinase RecA Machinery gene
  CDO84_RS08110 (CDO84_08110) - 1613598..1614773 (+) 1176 WP_014664022.1 serine hydrolase domain-containing protein -
  CDO84_RS08115 (CDO84_08115) rny 1615050..1616612 (+) 1563 WP_003221010.1 ribonuclease Y -

Sequence

Protein


Download         Length: 416 a.a.        Molecular weight: 45453.81 Da        Isoelectric Point: 5.2539

>NTDB_id=234794 CDO84_RS08100 WP_040083142.1 1610962..1612212(+) (cinA) [Bacillus sp. MD-5]
MEFPKKAEIIAVGSELLLGQIANTNAQFISKQLAEIGVNVFYHTAVGDNPERLKQVIRIAEERSDFIIFSGGLGPTKDDL
TKETIANTVGRPLVLNDEAFQSIEDYFKRTKRTMSPNNRKQALVIEGSDVLANHFGMAPGMLIEHESRFYMLLPGPPSEL
RPMFENEAKPLLLKKMGSNEKIVSTVLRFFGIGESQLEADLEDIIDAQTNPTIAPLAADGEVTLRLTAKHADEKETERLL
KETEAVILERVGEFFYGYDDTSLVKELSKACKEKGITISAAESFTGGLFSEWLTDLSGASTLFAGGVVCYTNDVKQNVLG
VKKDTLDRFGAVSKECAAELAKGVQKLTGSDIGISFTGVAGPDAQEGHEPGHVFIGISANGKEEVHEFHFAGSRTGIRKR
GAKYGCHLILKLLEQK

Nucleotide


Download         Length: 1251 bp        

>NTDB_id=234794 CDO84_RS08100 WP_040083142.1 1610962..1612212(+) (cinA) [Bacillus sp. MD-5]
ATGGAATTTCCAAAAAAAGCAGAAATAATTGCAGTCGGTTCAGAGCTGCTGCTTGGCCAAATCGCCAATACAAATGCTCA
ATTTATCAGCAAACAGCTCGCTGAAATCGGGGTCAACGTATTTTATCATACAGCGGTCGGAGACAATCCGGAGCGGCTGA
AGCAGGTCATCCGCATTGCTGAAGAACGCTCTGACTTCATTATTTTTTCAGGAGGTCTTGGACCCACAAAAGATGACCTG
ACGAAAGAAACGATTGCAAATACGGTGGGGCGTCCGCTTGTGTTAAATGATGAGGCATTCCAATCCATTGAGGACTATTT
CAAGCGAACAAAACGCACGATGTCACCTAATAACCGAAAACAGGCGCTTGTGATCGAAGGATCTGACGTGCTGGCGAATC
ACTTTGGAATGGCCCCGGGAATGCTCATAGAGCATGAATCGCGCTTCTATATGCTTCTTCCTGGGCCGCCGAGCGAATTG
CGTCCAATGTTTGAAAACGAGGCAAAGCCTCTTCTGCTCAAAAAGATGGGTTCAAATGAAAAAATTGTGTCCACCGTTCT
TCGCTTTTTCGGTATCGGCGAATCTCAGCTTGAAGCCGATTTGGAAGACATTATTGATGCACAAACCAACCCGACAATCG
CTCCTTTGGCTGCTGATGGAGAGGTGACGCTGCGTCTGACAGCCAAACACGCCGATGAAAAGGAAACAGAGCGTCTGCTA
AAAGAAACAGAGGCCGTTATCTTAGAGCGTGTCGGTGAATTTTTCTATGGGTACGATGATACTTCTCTTGTAAAAGAGCT
ATCTAAAGCATGTAAGGAAAAAGGCATTACAATTTCTGCGGCAGAAAGCTTTACTGGCGGGCTTTTTTCTGAATGGCTGA
CGGATCTTAGCGGTGCTTCAACATTATTTGCCGGCGGTGTTGTTTGCTATACAAACGACGTGAAGCAGAATGTGCTTGGT
GTGAAGAAGGACACATTAGACCGTTTTGGAGCGGTCAGCAAGGAATGCGCAGCCGAACTGGCTAAGGGTGTTCAAAAACT
CACTGGCAGCGATATCGGCATTAGCTTTACTGGTGTAGCAGGACCTGATGCTCAAGAAGGGCATGAGCCTGGGCATGTGT
TTATCGGTATTTCCGCAAATGGGAAAGAAGAGGTTCATGAGTTTCACTTTGCGGGCTCCAGAACGGGAATCAGAAAACGC
GGCGCCAAATATGGCTGCCATTTAATCTTAAAGCTTTTAGAACAAAAATAA

Domains

Predicted by InterproScan.

Competence-damaged protein (CinA)

(261-412)

Damage-inducible protein CinA KH domain (CinA_KH)

(184-257)

Probable molybdopterin binding domain (MoCF_biosynth)

(9-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Bacillus subtilis subsp. subtilis str. 168

98.077

100

0.981
  cinA Streptococcus mitis NCTC 12261

45.455

100

0.457
  cinA Streptococcus mitis SK321

45.455

100

0.457
  cinA Streptococcus pneumoniae TIGR4

45.215

100

0.454
  cinA Streptococcus mutans UA159

45.521

99.279

0.452
  cinA Streptococcus pneumoniae Rx1

44.976

100

0.452
  cinA Streptococcus pneumoniae R6

44.976

100

0.452
  cinA Streptococcus pneumoniae D39

44.737

100

0.45
  cinA Streptococcus suis isolate S10

41.379

90.625

0.375

Multiple sequence alignment