Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CC204_RS14145 Genome accession   NZ_CP021874
Coordinates   2830029..2831078 (+) Length   349 a.a.
NCBI ID   WP_088270753.1    Uniprot ID   -
Organism   Enterococcus wangshanyuanii strain MN05     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2825029..2836078
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC204_RS14120 - 2825222..2825635 (+) 414 WP_088270749.1 Rrf2 family transcriptional regulator -
  CC204_RS14125 - 2825712..2826335 (+) 624 WP_088270750.1 NAD(P)-dependent oxidoreductase -
  CC204_RS14130 - 2826502..2827290 (+) 789 WP_088270751.1 TraX family protein -
  CC204_RS21530 - 2827339..2827953 (-) 615 WP_227011162.1 hypothetical protein -
  CC204_RS21535 - 2828082..2828498 (-) 417 WP_227011163.1 hypothetical protein -
  CC204_RS14140 cinA 2828673..2829914 (+) 1242 WP_088270752.1 competence/damage-inducible protein A Machinery gene
  CC204_RS14145 recA 2830029..2831078 (+) 1050 WP_088270753.1 recombinase RecA Machinery gene
  CC204_RS14150 rny 2831339..2832895 (+) 1557 WP_088270754.1 ribonuclease Y -
  CC204_RS14155 - 2833136..2834788 (+) 1653 WP_088270755.1 peptide ABC transporter substrate-binding protein -
  CC204_RS14160 - 2835027..2835365 (-) 339 WP_088270756.1 MucBP domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37643.96 Da        Isoelectric Point: 4.8438

>NTDB_id=234337 CC204_RS14145 WP_088270753.1 2830029..2831078(+) (recA) [Enterococcus wangshanyuanii strain MN05]
MADDRKVALDAALKKIEKNFGKGSVMKLGEKIDQQISTIPSGSLALDVALGVGGYPRGRIVEVYGPESSGKTTVALHAIA
SVQKQGGTAAFIDAEHALDPQYAQKLGVNIDELLLSQPDTGEQGLEIADALVSSGAIDIVVIDSVAALVPRAEIDGEMGA
SHVGLQARLMSQALRKLSGSINKTKTIAIFINQIREKVGVMFGNPETTPGGRALKFYATVRLEVRRAEQLKQGTDIVGNR
TKIKVVKNKVAPPFKVAEVDIMYGQGISQEGELLDMAVEKDIVDKSGAWYSYKEERIGQGRENVKVYMLEHPEMVEEVSK
RVRDAYGIGDGTAVVEVEEGQEELPLDEE

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=234337 CC204_RS14145 WP_088270753.1 2830029..2831078(+) (recA) [Enterococcus wangshanyuanii strain MN05]
TTGGCAGATGATCGTAAAGTGGCCTTAGATGCCGCATTAAAAAAAATCGAAAAGAACTTTGGTAAAGGTTCAGTAATGAA
ATTAGGGGAGAAGATTGATCAACAGATCTCTACGATTCCTAGTGGCTCATTAGCTCTAGACGTTGCATTAGGTGTCGGCG
GATATCCTCGCGGACGGATCGTTGAAGTCTACGGACCAGAGAGTTCCGGTAAGACGACAGTTGCCTTGCATGCGATTGCA
TCTGTACAAAAACAAGGCGGAACAGCAGCCTTTATCGATGCGGAGCATGCCTTAGATCCGCAATATGCACAAAAACTAGG
TGTAAATATTGATGAATTATTACTTTCACAACCAGATACAGGAGAGCAAGGCTTGGAAATCGCTGATGCTTTAGTTTCCA
GTGGTGCGATCGATATTGTTGTTATCGACTCGGTAGCAGCCTTAGTGCCTCGTGCAGAAATTGATGGCGAAATGGGTGCC
AGTCACGTTGGGTTACAAGCACGTTTGATGTCACAAGCATTGCGTAAGCTTTCAGGCTCTATTAACAAAACAAAAACGAT
CGCTATTTTTATCAATCAAATTCGTGAAAAAGTCGGTGTGATGTTTGGTAATCCCGAAACAACTCCAGGCGGACGTGCAT
TGAAATTCTACGCGACAGTTCGTTTAGAAGTAAGACGTGCGGAACAATTGAAGCAAGGAACAGATATTGTTGGTAACCGT
ACGAAAATCAAAGTAGTGAAGAACAAAGTAGCACCGCCATTCAAGGTTGCGGAAGTTGACATCATGTATGGTCAAGGGAT
TTCTCAAGAAGGTGAGCTTCTTGATATGGCTGTTGAAAAAGATATCGTAGACAAGAGCGGCGCATGGTACAGCTACAAAG
AAGAACGCATCGGACAAGGCCGTGAGAATGTGAAAGTCTACATGCTGGAGCATCCAGAAATGGTTGAAGAAGTCTCTAAG
CGTGTACGTGATGCTTATGGTATCGGCGACGGTACGGCAGTTGTTGAAGTAGAAGAAGGTCAAGAAGAATTACCGCTTGA
CGAAGAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(8-268)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Latilactobacillus sakei subsp. sakei 23K

81.098

93.983

0.762
  recA Bacillus subtilis subsp. subtilis str. 168

78.012

95.129

0.742
  recA Streptococcus pneumoniae Rx1

69.231

100

0.696
  recA Streptococcus pneumoniae D39

69.231

100

0.696
  recA Streptococcus pneumoniae R6

69.231

100

0.696
  recA Streptococcus pneumoniae TIGR4

69.231

100

0.696
  recA Streptococcus mitis NCTC 12261

67.416

100

0.688
  recA Streptococcus mitis SK321

67.416

100

0.688
  recA Streptococcus pyogenes NZ131

70.091

94.842

0.665
  recA Streptococcus mutans UA159

68.976

95.129

0.656
  recA Lactococcus lactis subsp. cremoris KW2

68.358

95.989

0.656
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

63.72

93.983

0.599
  recA Acinetobacter baumannii D1279779

60.819

97.994

0.596
  recA Neisseria gonorrhoeae MS11

63.222

94.269

0.596
  recA Neisseria gonorrhoeae MS11

63.222

94.269

0.596
  recA Neisseria gonorrhoeae strain FA1090

63.222

94.269

0.596
  recA Ralstonia pseudosolanacearum GMI1000

62.805

93.983

0.59
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

59.767

98.281

0.587
  recA Acinetobacter baylyi ADP1

62.963

92.837

0.585
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.515

94.556

0.582
  recA Vibrio cholerae strain A1552

62.037

92.837

0.576
  recA Vibrio cholerae O1 biovar El Tor strain E7946

62.037

92.837

0.576
  recA Pseudomonas stutzeri DSM 10701

61.3

92.55

0.567
  recA Glaesserella parasuis strain SC1401

60.87

92.264

0.562
  recA Helicobacter pylori 26695

59.202

93.41

0.553
  recA Helicobacter pylori strain NCTC11637

59.202

93.41

0.553

Multiple sequence alignment