Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   CC204_RS14140 Genome accession   NZ_CP021874
Coordinates   2828673..2829914 (+) Length   413 a.a.
NCBI ID   WP_088270752.1    Uniprot ID   -
Organism   Enterococcus wangshanyuanii strain MN05     
Function   require for competence (predicted from homology)   
Unclear

Genomic Context

Location: 2823673..2834914
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CC204_RS14115 - 2824293..2825132 (+) 840 WP_162288357.1 helix-turn-helix domain-containing protein -
  CC204_RS14120 - 2825222..2825635 (+) 414 WP_088270749.1 Rrf2 family transcriptional regulator -
  CC204_RS14125 - 2825712..2826335 (+) 624 WP_088270750.1 NAD(P)-dependent oxidoreductase -
  CC204_RS14130 - 2826502..2827290 (+) 789 WP_088270751.1 TraX family protein -
  CC204_RS21530 - 2827339..2827953 (-) 615 WP_227011162.1 hypothetical protein -
  CC204_RS21535 - 2828082..2828498 (-) 417 WP_227011163.1 hypothetical protein -
  CC204_RS14140 cinA 2828673..2829914 (+) 1242 WP_088270752.1 competence/damage-inducible protein A Machinery gene
  CC204_RS14145 recA 2830029..2831078 (+) 1050 WP_088270753.1 recombinase RecA Machinery gene
  CC204_RS14150 rny 2831339..2832895 (+) 1557 WP_088270754.1 ribonuclease Y -
  CC204_RS14155 - 2833136..2834788 (+) 1653 WP_088270755.1 peptide ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45200.35 Da        Isoelectric Point: 4.5173

>NTDB_id=234336 CC204_RS14140 WP_088270752.1 2828673..2829914(+) (cinA) [Enterococcus wangshanyuanii strain MN05]
MKAEIIAVGTELLLGQVVNTNATFLSEELADLGIEVYYHTVVGDNPVRLEALLTQAQERSDLIVLCGGLGPTDDDLTKDT
VAAHIHHSLIQDEEALAQLHDYFNFSKNKMTENNLRQTLMIEGGRAIQNPAGLAVGSLVTEADTTYLLLPGPPNELKPMF
KKNARPLLEELFPQQEQLLSRVLRFYGIGESQLVTELKGLIDNQSNPTIAPYAKPNEVTLRLTAKVTDRKEGERLLDQTE
AEVMSLVGEYFYGYGDENSLVEVTVERLKQAGKTVSAAESLTAGLFQSTLGDVPGVSEVFKGGFVTYSEQTKETFLGIEP
TLIEKNGVVSEACAIAMAEQARILSEADFAVSFTGVAGPDELEGQPAGTVWIGLAEKGKPTIAELQHFTRDRRYIRRSAV
MKGLDMVRRAIDK

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=234336 CC204_RS14140 WP_088270752.1 2828673..2829914(+) (cinA) [Enterococcus wangshanyuanii strain MN05]
ATGAAAGCAGAAATTATAGCAGTTGGTACAGAGTTATTATTAGGTCAAGTCGTGAATACGAATGCGACATTTTTATCAGA
AGAATTAGCGGATCTAGGTATTGAGGTATATTATCATACCGTTGTAGGTGATAACCCAGTACGTTTAGAGGCGCTATTGA
CACAAGCGCAAGAGCGTAGTGATTTGATTGTGTTATGCGGCGGCTTAGGTCCGACTGATGATGATTTAACAAAGGATACT
GTAGCAGCTCACATTCATCATTCGTTGATTCAGGATGAAGAGGCGTTAGCACAGCTGCACGATTATTTTAACTTCTCTAA
GAATAAAATGACGGAAAATAACCTGCGGCAAACACTAATGATCGAAGGTGGCAGAGCCATTCAGAATCCAGCTGGTTTGG
CTGTAGGATCATTAGTTACGGAAGCTGATACAACTTATTTATTGTTACCGGGGCCGCCAAATGAATTGAAACCGATGTTC
AAAAAAAATGCCCGTCCTTTGTTGGAAGAGCTTTTTCCCCAGCAAGAGCAGCTATTATCGCGAGTACTTAGATTCTATGG
TATCGGTGAATCACAATTAGTCACAGAATTAAAGGGACTGATCGATAATCAGAGCAATCCAACGATTGCTCCATATGCTA
AACCCAACGAAGTCACGTTGCGTTTGACTGCTAAAGTGACGGATCGCAAAGAAGGAGAGCGGTTGTTGGATCAGACTGAA
GCTGAGGTCATGTCACTAGTAGGTGAGTATTTTTACGGCTATGGTGATGAGAATAGCTTAGTTGAAGTAACTGTCGAGCG
ATTAAAACAAGCTGGAAAAACCGTTTCAGCAGCGGAAAGCTTAACAGCTGGTCTATTTCAGAGTACTTTAGGAGATGTTC
CAGGAGTTTCAGAGGTGTTTAAAGGAGGGTTTGTCACATACTCTGAACAGACAAAAGAAACGTTCTTAGGGATTGAACCC
ACCTTAATCGAAAAAAATGGTGTAGTTAGTGAAGCTTGTGCGATTGCAATGGCTGAGCAGGCAAGGATCTTGAGTGAGGC
TGATTTTGCGGTTTCCTTCACTGGGGTAGCAGGACCAGATGAATTGGAGGGGCAGCCGGCTGGAACGGTTTGGATTGGAT
TGGCAGAAAAGGGGAAACCAACGATAGCAGAACTTCAGCATTTTACCAGAGACAGAAGGTATATCCGTCGAAGTGCTGTA
ATGAAGGGCTTGGATATGGTTCGTAGGGCTATTGATAAGTAA

Domains

Predicted by InterproScan.

Probable molybdopterin binding domain (MoCF_biosynth)

(5-169)

Competence-damaged protein (CinA)

(258-410)

Damage-inducible protein CinA KH domain (CinA_KH)

(180-253)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mutans UA159

51.691

100

0.518
  cinA Streptococcus pneumoniae TIGR4

50.474

100

0.516
  cinA Streptococcus mitis SK321

50.474

100

0.516
  cinA Streptococcus mitis NCTC 12261

50.237

100

0.513
  cinA Streptococcus pneumoniae R6

50

100

0.511
  cinA Streptococcus pneumoniae D39

50

100

0.511
  cinA Streptococcus pneumoniae Rx1

50

100

0.511
  cinA Bacillus subtilis subsp. subtilis str. 168

48.301

99.758

0.482
  cinA Streptococcus suis isolate S10

43.478

100

0.436

Multiple sequence alignment