Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   CDA09_RS20855 Genome accession   NZ_CP021731
Coordinates   4492533..4493567 (+) Length   344 a.a.
NCBI ID   WP_121430399.1    Uniprot ID   -
Organism   Azoarcus sp. DN11     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4487533..4498567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CDA09_RS20830 (CDA09_20805) - 4488511..4489395 (+) 885 WP_121430394.1 branched-chain amino acid ABC transporter permease -
  CDA09_RS20835 (CDA09_20810) - 4489466..4490395 (+) 930 WP_121430395.1 branched-chain amino acid ABC transporter permease -
  CDA09_RS20840 (CDA09_20815) thiL 4490502..4491461 (+) 960 WP_121430396.1 thiamine-phosphate kinase -
  CDA09_RS20845 (CDA09_20820) - 4491483..4491962 (+) 480 WP_121430397.1 phosphatidylglycerophosphatase A -
  CDA09_RS20850 (CDA09_20825) - 4491968..4492447 (+) 480 WP_121430398.1 nicotinamide-nucleotide amidohydrolase family protein -
  CDA09_RS20855 (CDA09_20830) recA 4492533..4493567 (+) 1035 WP_121430399.1 recombinase RecA Machinery gene
  CDA09_RS20860 (CDA09_20835) recX 4493582..4494031 (+) 450 WP_121430400.1 recombination regulator RecX -
  CDA09_RS20865 (CDA09_20840) lptB 4494018..4494740 (+) 723 WP_121430401.1 LPS export ABC transporter ATP-binding protein -
  CDA09_RS20870 (CDA09_20845) rpoN/rpoN1 4494758..4496200 (+) 1443 WP_121430402.1 RNA polymerase factor sigma-54 Machinery gene
  CDA09_RS20875 (CDA09_20850) raiA 4496218..4496544 (+) 327 WP_121430403.1 ribosome-associated translation inhibitor RaiA -
  CDA09_RS20880 (CDA09_20855) ptsN 4496681..4497166 (+) 486 WP_121430968.1 PTS IIA-like nitrogen regulatory protein PtsN -
  CDA09_RS20885 (CDA09_20860) hprK 4497135..4498076 (+) 942 WP_121430404.1 HPr(Ser) kinase/phosphatase -

Sequence

Protein


Download         Length: 344 a.a.        Molecular weight: 36853.28 Da        Isoelectric Point: 5.8853

>NTDB_id=232932 CDA09_RS20855 WP_121430399.1 4492533..4493567(+) (recA) [Azoarcus sp. DN11]
MDDNKAKALAAALSQIEKQFGKGSIMRMGDGNVEKDIQTVSTGSLGLDIALGLGGLPRGRVVEIYGPESSGKTTLTLQVI
AEMQKIGGTAAFIDAEHALDVGYAEKLGVNIQDLLISQPDTGEQALEIADMLVRSGGVDIVVIDSVAALTPKAEIEGEMG
DQLPGLQARLMSQALRKLTANIKRTNTLVIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRTGAIKKGDEVVGS
ETRCKVVKNKVSPPFKEAHFDILYGEGISREGEIIDLGVQHKIVDKSGAWYAYNGDKIGQGKDNSREFLRANPALAREIE
NKVRVTVGLKELPAEPAQPAVEAA

Nucleotide


Download         Length: 1035 bp        

>NTDB_id=232932 CDA09_RS20855 WP_121430399.1 4492533..4493567(+) (recA) [Azoarcus sp. DN11]
ATGGACGACAACAAGGCCAAGGCCCTCGCCGCCGCGCTCTCGCAGATCGAGAAGCAGTTCGGCAAGGGTTCGATCATGCG
AATGGGCGACGGCAACGTCGAAAAGGACATCCAGACGGTCTCGACCGGCTCGCTCGGGCTCGACATCGCGCTGGGCCTCG
GCGGACTGCCGCGCGGCCGCGTCGTCGAGATCTACGGCCCGGAATCGTCCGGCAAGACCACGCTCACGCTGCAGGTCATC
GCCGAGATGCAGAAGATCGGCGGCACCGCGGCCTTCATCGACGCCGAACACGCGCTTGACGTCGGCTACGCCGAGAAGCT
CGGCGTGAACATCCAGGACCTCCTGATCTCGCAGCCCGACACCGGCGAACAGGCGCTCGAGATCGCCGACATGCTGGTGC
GCTCGGGCGGCGTCGATATCGTCGTCATCGACTCGGTCGCGGCACTCACGCCGAAAGCCGAAATCGAAGGCGAGATGGGC
GACCAGCTGCCCGGCCTGCAGGCCCGCCTGATGAGCCAGGCGCTGCGCAAGCTCACGGCGAACATCAAGCGCACCAACAC
GCTGGTGATCTTCATCAACCAGATCCGCATGAAGATCGGCGTGATGTTCGGCAACCCGGAAACCACCACCGGCGGCAACG
CGCTCAAGTTCTACGCCTCCGTGCGCCTCGACATCCGCCGCACCGGCGCGATCAAGAAGGGCGACGAGGTCGTCGGCTCC
GAAACGCGCTGCAAGGTCGTCAAGAACAAGGTCTCGCCCCCGTTCAAGGAAGCGCACTTCGACATCCTCTACGGCGAAGG
CATCTCGCGCGAAGGCGAGATCATCGACCTCGGCGTGCAGCACAAGATCGTCGACAAGTCGGGCGCGTGGTACGCGTACA
ACGGCGACAAGATCGGTCAGGGCAAGGACAATTCGCGCGAATTCCTGCGCGCGAACCCCGCGCTCGCGCGCGAGATCGAG
AACAAGGTGCGCGTCACCGTCGGCCTCAAGGAATTGCCAGCCGAACCCGCGCAACCGGCCGTCGAAGCGGCCTGA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-269)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Ralstonia pseudosolanacearum GMI1000

82.132

92.733

0.762
  recA Pseudomonas stutzeri DSM 10701

75.309

94.186

0.709
  recA Vibrio cholerae strain A1552

74.074

94.186

0.698
  recA Vibrio cholerae O1 biovar El Tor strain E7946

74.074

94.186

0.698
  recA Neisseria gonorrhoeae MS11

70.118

98.256

0.689
  recA Neisseria gonorrhoeae MS11

70.118

98.256

0.689
  recA Neisseria gonorrhoeae strain FA1090

70.118

98.256

0.689
  recA Acinetobacter baylyi ADP1

72.531

94.186

0.683
  recA Acinetobacter baumannii D1279779

72.222

94.186

0.68
  recA Glaesserella parasuis strain SC1401

70.154

94.477

0.663
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

66.159

95.349

0.631
  recA Helicobacter pylori strain NCTC11637

63.265

99.709

0.631
  recA Helicobacter pylori 26695

62.974

99.709

0.628
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

64.653

96.221

0.622
  recA Bacillus subtilis subsp. subtilis str. 168

64.742

95.64

0.619
  recA Latilactobacillus sakei subsp. sakei 23K

62.162

96.802

0.602
  recA Streptococcus mutans UA159

61.261

96.802

0.593
  recA Streptococcus mitis SK321

61.398

95.64

0.587
  recA Streptococcus mitis NCTC 12261

61.398

95.64

0.587
  recA Streptococcus pyogenes NZ131

60.909

95.93

0.584
  recA Streptococcus pneumoniae Rx1

61.094

95.64

0.584
  recA Streptococcus pneumoniae D39

61.094

95.64

0.584
  recA Streptococcus pneumoniae R6

61.094

95.64

0.584
  recA Streptococcus pneumoniae TIGR4

61.094

95.64

0.584
  recA Lactococcus lactis subsp. cremoris KW2

60.55

95.058

0.576
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

58.951

94.186

0.555

Multiple sequence alignment