Detailed information    

insolico Bioinformatically predicted

Overview

Name   recA   Type   Machinery gene
Locus tag   BkAM31D_RS13165 Genome accession   NZ_CP020814
Coordinates   2607393..2608442 (-) Length   349 a.a.
NCBI ID   WP_066150046.1    Uniprot ID   -
Organism   Halalkalibacter krulwichiae strain AM31D     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2602393..2613442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BkAM31D_RS13145 (BkAM31D_14390) - 2603911..2604576 (-) 666 WP_066150034.1 ATPase -
  BkAM31D_RS13150 (BkAM31D_14395) - 2604569..2604817 (-) 249 WP_066150036.1 hypothetical protein -
  BkAM31D_RS13155 (BkAM31D_14400) - 2604829..2606256 (-) 1428 WP_066150039.1 AAA family ATPase -
  BkAM31D_RS13160 (BkAM31D_14405) - 2606249..2607238 (-) 990 WP_066150042.1 metallophosphoesterase -
  BkAM31D_RS13165 (BkAM31D_14410) recA 2607393..2608442 (-) 1050 WP_066150046.1 recombinase RecA Machinery gene
  BkAM31D_RS13170 (BkAM31D_14415) - 2608702..2610330 (-) 1629 WP_066150049.1 DEAD/DEAH box helicase -
  BkAM31D_RS13175 (BkAM31D_14420) cinA 2610327..2611580 (-) 1254 WP_066150052.1 competence/damage-inducible protein A Machinery gene
  BkAM31D_RS13180 (BkAM31D_14425) pgsA 2611596..2612174 (-) 579 WP_066150055.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  BkAM31D_RS13185 (BkAM31D_14430) - 2612356..2613249 (-) 894 WP_066150058.1 RodZ family helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 349 a.a.        Molecular weight: 37893.13 Da        Isoelectric Point: 4.8438

>NTDB_id=226011 BkAM31D_RS13165 WP_066150046.1 2607393..2608442(-) (recA) [Halalkalibacter krulwichiae strain AM31D]
MSDRKAALDMALRQIEKQFGKGSIMKLGEQAEQRVSTVSSGALALDIALGVGGYPKGRIIEVYGPESSGKTTVTLHAIAE
VQRQGGQAAFIDAEHALDPVYAQKLGVNIDELLLSQPDTGEQALEIAEALVRSGAIDILVIDSVAALVPKAEIEGDMGDS
HVGLQARLMSQALRKLSGAINKSKTIAIFINQIREKVGVMFGNPETTPGGRALKFYSSVRLEVRRAETLKQGNDMVGNKT
KIKVVKNKVAPPFKVAEVDIMYGEGISREGSVLDIASELDIVQKSGAWYSFNEERLGQGRENSKQFLRENAEILNEVETL
VRDHYGLNGEIEVPAATDEEFEEVPFDLK

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=226011 BkAM31D_RS13165 WP_066150046.1 2607393..2608442(-) (recA) [Halalkalibacter krulwichiae strain AM31D]
ATGAGTGATCGTAAAGCGGCCCTTGATATGGCCTTGCGTCAAATTGAAAAACAATTTGGTAAAGGATCGATTATGAAGCT
TGGAGAACAAGCGGAGCAAAGAGTATCAACAGTTTCTAGTGGTGCTCTAGCATTAGATATCGCGCTTGGGGTTGGCGGAT
ATCCAAAAGGCAGAATTATTGAGGTATATGGACCGGAATCCTCAGGTAAAACAACTGTAACTCTTCATGCAATTGCTGAA
GTTCAACGCCAGGGAGGGCAAGCTGCATTTATTGATGCAGAACATGCTCTTGATCCAGTCTATGCACAAAAGTTAGGTGT
AAATATTGATGAGCTTTTACTTTCTCAACCAGACACTGGTGAACAAGCATTAGAAATTGCTGAAGCTCTTGTTAGAAGTG
GTGCGATTGATATTCTAGTTATTGATAGTGTTGCAGCACTTGTTCCAAAGGCGGAAATTGAAGGGGACATGGGAGATAGT
CATGTCGGCTTACAAGCTCGTTTAATGTCTCAGGCACTTCGTAAATTATCTGGTGCGATTAACAAATCTAAAACAATTGC
AATCTTTATTAACCAAATTCGTGAAAAAGTTGGAGTTATGTTTGGAAATCCTGAAACAACTCCAGGCGGACGTGCACTAA
AGTTTTATTCTTCAGTGCGTCTTGAAGTTCGTCGTGCTGAAACATTAAAGCAAGGAAACGATATGGTTGGTAACAAAACG
AAAATTAAAGTTGTGAAAAATAAGGTAGCTCCACCATTTAAAGTAGCGGAAGTTGATATTATGTACGGAGAAGGTATTTC
ACGTGAAGGTTCCGTATTAGATATAGCTTCTGAGCTTGATATCGTGCAAAAGAGTGGTGCTTGGTACTCATTTAATGAAG
AGCGTCTAGGACAAGGACGTGAAAATTCAAAACAATTCTTGAGAGAAAATGCGGAAATTTTGAATGAGGTTGAAACATTA
GTTCGTGATCATTACGGTCTTAATGGTGAAATTGAAGTGCCAGCAGCTACTGATGAGGAATTTGAAGAAGTTCCTTTCGA
TTTAAAATAA

Domains

Predicted by InterproScan.

recA bacterial DNA recombination protein (RecA)

(7-267)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recA Bacillus subtilis subsp. subtilis str. 168

85.671

93.983

0.805
  recA Latilactobacillus sakei subsp. sakei 23K

72.046

99.427

0.716
  recA Streptococcus pneumoniae D39

66.575

100

0.691
  recA Streptococcus pneumoniae Rx1

66.575

100

0.691
  recA Streptococcus pneumoniae R6

66.575

100

0.691
  recA Streptococcus pneumoniae TIGR4

66.575

100

0.691
  recA Streptococcus mitis NCTC 12261

67.318

100

0.691
  recA Streptococcus mitis SK321

67.039

100

0.688
  recA Streptococcus pyogenes NZ131

67.139

100

0.679
  recA Streptococcus mutans UA159

70.517

94.269

0.665
  recA Lactococcus lactis subsp. cremoris KW2

67.262

96.275

0.648
  recA Neisseria gonorrhoeae strain FA1090

63.265

98.281

0.622
  recA Neisseria gonorrhoeae MS11

63.265

98.281

0.622
  recA Neisseria gonorrhoeae MS11

63.265

98.281

0.622
  recA Vibrio cholerae strain A1552

61.318

100

0.613
  recA Vibrio cholerae O1 biovar El Tor strain E7946

61.318

100

0.613
  recA Acinetobacter baylyi ADP1

61.337

98.567

0.605
  recA Acinetobacter baumannii D1279779

61.584

97.708

0.602
  recA Ralstonia pseudosolanacearum GMI1000

66.561

89.971

0.599
  recA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

61.111

97.994

0.599
  recA Helicobacter pylori 26695

59.184

98.281

0.582
  recA Helicobacter pylori strain NCTC11637

59.184

98.281

0.582
  recA Glaesserella parasuis strain SC1401

62.154

93.123

0.579
  recA Riemerella anatipestifer ATCC 11845 = DSM 15868

61.468

93.696

0.576
  recA Pseudomonas stutzeri DSM 10701

61.875

91.691

0.567
  recA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

61.709

90.544

0.559

Multiple sequence alignment